Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01384 ATGGATTTGCCTGTGAGATTTGCAATGGATAGAGCAGGCTTGGTCGGAGCAGATGGCCCGACTCATTGTGGTTCTTTCGATGTTACTTTTATGGCATGCCTGCCTAACATGGTGGTCATGGCTCCGTCTGATGAGGCGGAACTCTTTAACATGGTTGCTACAGCTGCAGCCATAGATGACCGACCCAGTTGCTTCCGGTATCCACGAGGTAACGGTATTGGTGTAGAGCTGCCACCAGGGAATAAAGGCATTCCTATTGAGGTACTTGTTCACAAANAAAATTTATTAGATGACGATTTTAACGTACAAAAGCTTAAAAAAATTAGGGATGGAAGCCAAAAGAACTTTACAAAGGGGAGATGTGTCTATCCGCATATATCTATTTTGCGATTTCCGTTGACGTGGACCAATAGGAAAACGATCTGCCATTTCCCACTGTGGACTGTGGAGCAATGGCGCACTGCTTATTTTACAGTTAAGAACAAAGAGACCGAATTCCAAAGGAGACACCCAGCGAATGCGGCTTCAATTTGTCCCCTCAATCCCCATCCACCTTCAACTCTATCTTCCAATTCAGTCCACGCTTCCCGAGTTGCAGCAAAAGAGCACGATGGTTCAAGTGCTGTTTCTTCTCGGTTCTTATGGGGAACGGATCTGATGTTTCGATTTCAGAAAAGGGTCAATCAGGTATTGTTTAGAAAAAAGAAGATGAAAATTATGCTCACCAAGTGTTTGATGAAAAACCCAAGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAGAGACGGGAGAGTATCCTTCACAGAGGCCACCAACTCCTCTTTTGGACACAATAAACTATCCAATTCATATGAAAAATCTATCCATCAAGGTGAAACTAAAAACCCAAATCACAAATATAAAATCAAGCTTTTCACTTCCTTTCTAAAGAACCAAAAAAGCTTCATATCCTTAACTTTTGACTTGAAACTGTTAGAATTTTGTGATAGTTTAATAACATGGTACTACAGTATAAATGAAATTATGAAAGCTTCTGTGTTCAAACTCCTGTCTTCTGCCCCATTAATAGATAATCACGAGCTTTATCAACTAGCTGATGAAGTGAGATCGGATGTCATCTTCAATGTTTCTAAAACTGGTGGTCACTTGGGTTCCAGTCTTGGCGTGGTGGAGCTCACGGTGGCTCTTCACTATGTCTTCAATGCCCCACAGGACAGAATTTTGTGGGATGTTGGCCATCAGTCTTATCCACACAAAATTCTAACTGGAAGGAGGGATAAGATGTCTACTATTAGACAGACAAACGGGTTATCGGGATTCACGAAACGCTCAGAGAGTGAGTTTGATAGCTTTGGCGCAGGGCACAGCTCTACCACCATCTCAGCAGGCTTAGGAATGGCTGTGGGAAGGGATCTTAAGGGAAGAAAGAATAATGTGATTGCAGTTATAGGTGATGGTGCCATGACTGCAGGGCAAGCTTATGAAGCCATGAACAATGCCGGGTACCTTGACTCGGACATGATTGTTATTCTTAATGACAACAAACAAGTCTCTTTACCAACTGCGACTCTCGATGGGCCCGTAGCGCCCGTGGGAGCTTTGAGCAGTGCTCTCAGCAGGCTGCAGTCAAACAGGCCTCTCAGAGAACTGAGAGAGGTAGCCAAGGGCGTCACGAAACAAATTGGTGGTCCTATGCATGAATTGGCCGCAAAAGTTGATGAATATGCTCGTGGGATGATTAGTGGTTCTGGATCAACGTTATTTGAGGAGCTCGGGCTCTATTATATCGGCCCTGTTGATGGTCATAACGTGGATGATCTTGTCTCTATCCTTAAGGAAGTTAAGAGTACAAAAACCACTGGTCCAGTCCTTATCCATGTTGTCACTGAGAAAGGACGAGGTTATCCATATGCTGAAAAAGCTGCTGACAAGTACCATGGAGTCACAAAGTTTGATCCTGCTACTGGGAAACAACAGAAATCCAAGGCTCCGACGCAGTCATATACGACATACTTTGCAGAGGCATTGATTGCAGAAGCTGAAAAGGACAAAGATATTATCGCAATCCATGCTGCAATGGGAGGAGGCACAGGCTTAAATCTCTTTCAAAGACGTTTTCCGACAAGATGCTTTGATGTTGGCATAGCTGAACAGCATGCTGTTACATTTGCTGCTGGTCTGGCTTGTGAAGGCCTTAAACCATTTTGTGCGATCTATTCATCGTTCATGCAAAGGGCGTATGACCAGGCAAGCATACCCTTGATACTCCATTGGCAACGCGAATTGAATGTAGTTCATGATGTTGATCTGCAAAAGTTGCCTGTGAGATTTGCAATGGATAGAGCAGGCTTGGTCGGAGCAGATGGCCCGACTCATTGTGGTTCTTTCGATGTTACTTTTATGGCATGCCTGCCTAACATGGTGGTCATGGCTCCGTCTGATGAGGCGGAACTCTTTAACATGGTTGCTACAGCTGCAGCCATAGATGACCGACCCAGTTGCTTCCGGTATCCACGAGGTAACGGTATTGGTGTAGAGCTGCCACCAGGGAATAAAGGCATTCCTATTGAGGTTGGGAAAGGGAGGATTTTACTTGAAGGGGAAAGAGTTGCCCTGTTGGGCTATGGAACGGCAGTTCAAAGCTGTTTGGCTGCTGCATCTACGGTCGAACGCCGTGGCTTACGAATAACTGTTGCAGATGGACGTTTCTGCAAGCCACTCGACCGAGCCCTCATCCGAAGTCTAGCTAAATCACACGAGATTTTAATCACAGTGGAAGAAGGATCTATCGGGGGATTCGGGTCTCATGTCATCCAGTTTCTGGCCCTTGATGGCCTTCTTGACGGCACCTTGAAGTGGAGACCGCTAGTCCTTCCCGACCGATACATCGACCACGGATCGCCAGCAGACCAACTGGCCGAAGCAGGTCTTACTCCATCTCATATTGCTGCTACAGTATTTAATATGCTAGGACAAACCAGGGAAGCTCTAGAGATCATGTCATAG 3012 45.45 MDLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFNMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPIEVLVHKXNLLDDDFNVQKLKKIRDGSQKNFTKGRCVYPHISILRFPLTWTNRKTICHFPLWTVEQWRTAYFTVKNKETEFQRRHPANAASICPLNPHPPSTLSSNSVHASRVAAKEHDGSSAVSSRFLWGTDLMFRFQKRVNQVLFRKKKMKIMLTKCLMKNPSQEKARWDLCITFRDGRVSFTEATNSSFGHNKLSNSYEKSIHQGETKNPNHKYKIKLFTSFLKNQKSFISLTFDLKLLEFCDSLITWYYSINEIMKASVFKLLSSAPLIDNHELYQLADEVRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEFDSFGAGHSSTTISAGLGMAVGRDLKGRKNNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVAPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVSILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQQKSKAPTQSYTTYFAEALIAEAEKDKDIIAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQASIPLILHWQRELNVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFNMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASTVERRGLRITVADGRFCKPLDRALIRSLAKSHEILITVEEGSIGGFGSHVIQFLALDGLLDGTLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNMLGQTREALEIMS 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21869561 21878373 + Lsi09G013840.1 Lsi09g01384 670997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01384 1003 Gene3D - 350 640 - -
Lsi09g01384 1003 Gene3D - 1 76 - -
Lsi09g01384 1003 CDD TPP_PYR_DXS_TK_like 1 69 - -
Lsi09g01384 1003 SUPERFAMILY TK C-terminal domain-like 856 992 IPR009014 GO:0003824
Lsi09g01384 1003 Gene3D - 667 851 - -
Lsi09g01384 1003 Gene3D - 861 993 IPR009014 GO:0003824
Lsi09g01384 1003 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 358 631 IPR005477 GO:0008661|GO:0016114
Lsi09g01384 1003 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 2 89 IPR005477 GO:0008661|GO:0016114
Lsi09g01384 1003 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 361 999 IPR005477 GO:0008661|GO:0016114
Lsi09g01384 1003 Pfam Transketolase, C-terminal domain 861 984 IPR033248 -
Lsi09g01384 1003 ProSitePatterns Transketolase signature 2. 788 804 IPR020826 -
Lsi09g01384 1003 ProSitePatterns Transketolase signature 2. 16 32 IPR020826 -
Lsi09g01384 1003 ProSitePatterns Transketolase signature 1. 371 390 IPR005474 -
Lsi09g01384 1003 SMART Transket_pyr_3 668 847 IPR005475 -
Lsi09g01384 1003 CDD TPP_DXS 382 637 IPR005477 GO:0008661|GO:0016114
Lsi09g01384 1003 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 666 870 IPR029061 -
Lsi09g01384 1003 CDD TPP_PYR_DXS_TK_like 674 841 - -
Lsi09g01384 1003 Pfam Transketolase, pyrimidine binding domain 669 843 IPR005475 -
Lsi09g01384 1003 Pfam Transketolase, pyrimidine binding domain 3 71 IPR005475 -
Lsi09g01384 1003 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1 71 IPR029061 -
Lsi09g01384 1003 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 358 992 IPR005477 GO:0008661|GO:0016114
Lsi09g01384 1003 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 345 993 IPR005477 GO:0008661|GO:0016114
Lsi09g01384 1003 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 348 730 IPR029061 -
Lsi09g01384 1003 PANTHER BNAA01G35430D PROTEIN 361 999 - -
Lsi09g01384 1003 PANTHER BNAA01G35430D PROTEIN 2 89 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01384 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101214927 1223.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01110 Lsi-Chr6:21376239 Lsi09g01384 Lsi-Chr9:21869561 1.92E-41 dispersed
Lsi08g01169 Lsi-Chr8:20310813 Lsi09g01384 Lsi-Chr9:21869561 1.49E-28 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121