Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01389 ATGGATATCGTCAATGAATTTAACTTAAATTTGAGTCTGAATGTTCTTTATAAGCAGGAAACCGTCGAGATTGTAAAATCTGTAAATGAACAGACTTCAGATACTGGACATAGTAGTAGACGCCCTGATATTTCACTTCAAATACCCCTGAGATCGACGGGCTTAGGTAAAAGCCGTAGTGGAAAAGGTTTACTGCAATCTCAAGGTTCCAACAAAGGTGGTTTGTCTCCAGGAAGCATCTTAAGGGCTTTAAGCTCTAAGAGAAAAGGCATAGCTAGTGAAGGTGAGAAAAGTTCGCTCCTAAGTTCAGACCCAAGGACAACTGCGGAAAGCCCAATAATGACTTTCGCTTCAGCCTTTTCATGGAAAAAGTCCACCTCTCTCCCAGTTACTCCAGCATCAAACTTGTCCCCCTTGATTCCCCTCCCCACCACAACAACTACGATCAATGAAAAGCCAATGCCACGTAAAGAAGCAGTGCGTGCAGTTTCAAGGTCTCTATCTGTGCCCGGTAGAAATATCGTCATAGTACGATCTACATCTTTTGCTACCCCTAGGGCAAATTCTGAGGCCAGTGCCAGTTCTGATCAGAATGGTTCTGTTACCTTAGAAAATGATGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGTAGAATCTGTCTTGATCCATGTGAAGAAGAAAACACTCTTAAACTGGAATGCAGTTGCAAAGGAGACCTTAGGCTTGTACATAAAGATTGTGCTATAGAATGGTTTAGCAGAAGAGGAAGCAAGGTTTGTGAAGTCTGTAGGCAGGAGGTACAGAATTTACCCGTCACGCTACTCCGCATTCCCACCACCGCACAACGGGACGGAAGACTGTTGCAAAACCAAATGACATTTCGTTCACAGACAATAAGTGTCTGGCAAGACTTTGTGGTGCTTGTTTTAATCAGCACCATATGCTATTTCTTCTTCCTTGAGCAGCTTCTGATTCACGACTTGAAGACTGAGGCTATCGTTTACGCTGCACCTTTTGCGCTGGTGTTTGCAATCAAGGAGTATATATGGACTTATGCAGCTCTTGAGTTTGCTCTTGTAGCTATCATTCTTCATCTTTTCTATACTTTGCTGAAACTGAAGGCCATATATGCCATTTTGCTGTCTGCAATCTTGGGTTTTGGTGTGGCTATGAGCCTAAATGCTCTATACATTCATTACTACATTTGGCGAGTTCGAGCTGCGCAGAATCCTAACCCAGTATGA 1245 42.97 MDIVNEFNLNLSLNVLYKQETVEIVKSVNEQTSDTGHSSRRPDISLQIPLRSTGLGKSRSGKGLLQSQGSNKGGLSPGSILRALSSKRKGIASEGEKSSLLSSDPRTTAESPIMTFASAFSWKKSTSLPVTPASNLSPLIPLPTTTTTINEKPMPRKEAVRAVSRSLSVPGRNIVIVRSTSFATPRANSEASASSDQNGSVTLENDDEEIPEEEAVCRICLDPCEEENTLKLECSCKGDLRLVHKDCAIEWFSRRGSKVCEVCRQEVQNLPVTLLRIPTTAQRDGRLLQNQMTFRSQTISVWQDFVVLVLISTICYFFFLEQLLIHDLKTEAIVYAAPFALVFAIKEYIWTYAALEFALVAIILHLFYTLLKLKAIYAILLSAILGFGVAMSLNALYIHYYIWRVRAAQNPNPV 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21926685 21931434 + Lsi09G013890.1 Lsi09g01389 671002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01389 414 ProSiteProfiles Zinc finger RING-type profile. 217 264 IPR001841 -
Lsi09g01389 414 MobiDBLite consensus disorder prediction 185 201 - -
Lsi09g01389 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 271 IPR013083 -
Lsi09g01389 414 CDD RING_CH-C4HC3_MARCH 217 264 - -
Lsi09g01389 414 PANTHER ZINC FINGER PROTEIN 21 414 - -
Lsi09g01389 414 PANTHER OS02G0165000 PROTEIN 21 414 - -
Lsi09g01389 414 MobiDBLite consensus disorder prediction 28 79 - -
Lsi09g01389 414 MobiDBLite consensus disorder prediction 28 75 - -
Lsi09g01389 414 Pfam RING-variant domain 217 263 IPR011016 GO:0008270
Lsi09g01389 414 ProSiteProfiles Zinc finger RING-CH-type profile. 209 270 IPR011016 GO:0008270
Lsi09g01389 414 SUPERFAMILY RING/U-box 213 267 - -
Lsi09g01389 414 MobiDBLite consensus disorder prediction 185 209 - -
Lsi09g01389 414 SMART ringv_2 216 264 IPR011016 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01389 - - - csv:101219282 646.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00504 Lsi-Chr3:5824045 Lsi09g01389 Lsi-Chr9:21926685 6.66E-14 dispersed
Lsi09g01389 Lsi-Chr9:21926685 Lsi10g01271 Lsi-Chr10:16982354 1.37E-64 dispersed
Lsi09g01389 Lsi-Chr9:21926685 Lsi02g01422 Lsi-Chr2:19640386 1.28E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g377 . . . . . . . . Cmo08g01171 Cmo17g00289 . . . . . . . . . . . . . . Cla06g00513 Cam06g0551 Cec06g0551 Cco06g0558 Clacu06g0537 Cmu06g0537 Cre06g1305 Cone14ag0794 Cone15ag0795 . . . . Chy11g01462 . . . . . . . . . . . . Cma08g01198 Cma17g00301 Car08g01074 Car17g00276 Cpe12g00253 Cpe17g00101 Bhi12g01749 . . . . . . . . . . . . . Lsi09g01389 . . Cme11g01968
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005455 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 40