Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01394 | ATGGCGGCGCCTGAAATGATGGTCGAATCGGGCTTGTCGATAGTGGATTTTGGGATGGAGTTGGTGGCGGATCATACTTCGGTAGTTTCTTTAAACTTATTCGTCGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTACAGCCCTTGTCATTGGATTGTGTACCGGCACCATAATATTGCTAACAACTAGAGGGAAAAGCTCTCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCTATCATTTTCAATGCTGGGTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCTTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGACCTTTCTCATATGAATTCAAGCATCGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACTGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGCATGCTTTTGCCACCCTTTCTTTTGTCGCCGAGATCTTCATCTTTCTTTACGTTGGCATGGATGCTCTTGATATCGAGAATCCTGGAAAATCAATTGGGGTGAGTTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAACTTGGAGCAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCCATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTCTCCAGTACAGTGGTATTTGGAATGATGACAAAGCCCCTAATAGGAATTTTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCCTCTTCTCCAAAATCCTTCACAGTCCCACTCCTCGGCAATGACCAAAATACCCCTTCCCCTCTTGGCCTGTTTCTGAGAATCCCATCCCATACAGTTCACCATTACTGGCGAAGATTTGACGATGCATTCATGCGCCCTGTGTTCGGAGGACGGGGCTTTGTGCCCTTCGTCCCAGGCTCCCCTACGGAAGACCCAACACAACAATGGCAAATTGAGGAAGTGGAAGCCATTGATGAAAATAAAACCATTCTTATACAGACACCAAGATAG | 1518 | 43.68 | MAAPEMMVESGLSIVDFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESITALVIGLCTGTIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAHAFATLSFVAEIFIFLYVGMDALDIENPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLGNDQNTPSPLGLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPTQQWQIEEVEAIDENKTILIQTPR | 505 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 21975581 | 21981927 | - | Lsi09G013940.1 | Lsi09g01394 | 671007 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01394 | 505 | Pfam | Sodium/hydrogen exchanger family | 33 | 272 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Lsi09g01394 | 505 | PANTHER | SODIUM/HYDROGEN EXCHANGER 3 | 266 | 486 | - | - | |
Lsi09g01394 | 505 | PANTHER | SODIUM/HYDROGEN EXCHANGER 3 | 18 | 267 | - | - | |
Lsi09g01394 | 505 | Gene3D | - | 151 | 202 | - | - | |
Lsi09g01394 | 505 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 266 | 486 | IPR018422 | GO:0006812|GO:0015299|GO:0016021 | |
Lsi09g01394 | 505 | PRINTS | Na+/H+ exchanger signature | 103 | 117 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Lsi09g01394 | 505 | PRINTS | Na+/H+ exchanger signature | 118 | 126 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Lsi09g01394 | 505 | PRINTS | Na+/H+ exchanger signature | 89 | 100 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Lsi09g01394 | 505 | PRINTS | Na+/H+ exchanger signature | 158 | 168 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Lsi09g01394 | 505 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 18 | 267 | IPR018422 | GO:0006812|GO:0015299|GO:0016021 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02351 | Lsi-Chr2:30142221 | Lsi09g01394 | Lsi-Chr9:21975581 | 0 | dispersed | |
Lsi02g01171 | Lsi-Chr2:14367454 | Lsi09g01394 | Lsi-Chr9:21975581 | 1.52E-32 | transposed | |
Lsi02g01865 | Lsi-Chr2:24426756 | Lsi09g01394 | Lsi-Chr9:21975581 | 2.02E-102 | transposed | |
Lsi02g01866 | Lsi-Chr2:24431593 | Lsi09g01394 | Lsi-Chr9:21975581 | 2.89E-36 | transposed | |
Lsi06g00185 | Lsi-Chr6:1992647 | Lsi09g01394 | Lsi-Chr9:21975581 | 0 | transposed | |
Lsi02g02350 | Lsi-Chr2:30131308 | Lsi09g01394 | Lsi-Chr9:21975581 | 3.14E-96 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01394 | - | - | csv:101215493 | 870.537 |