Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01394 ATGGCGGCGCCTGAAATGATGGTCGAATCGGGCTTGTCGATAGTGGATTTTGGGATGGAGTTGGTGGCGGATCATACTTCGGTAGTTTCTTTAAACTTATTCGTCGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTACAGCCCTTGTCATTGGATTGTGTACCGGCACCATAATATTGCTAACAACTAGAGGGAAAAGCTCTCATTTATTTTTGTTCAATGAAGAGCTTTTCTTTATTTATCTCCTTCCGCCTATCATTTTCAATGCTGGGTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAGAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCTATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCTTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGACCTTTCTCATATGAATTCAAGCATCGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCATTGCAAGTACTGTGCTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGGCATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGCATGCTTTTGCCACCCTTTCTTTTGTCGCCGAGATCTTCATCTTTCTTTACGTTGGCATGGATGCTCTTGATATCGAGAATCCTGGAAAATCAATTGGGGTGAGTTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTATCCTCCTTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAACTTGGAGCAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGTGCTGTATCCATGGCACTTGCATATAATCAGTTCACCAGGTCAGGCCACACCCATTTACCAGGCAATGCAATCATGATCACCAGTACCATCACAGTTGTTCTCTCCAGTACAGTGGTATTTGGAATGATGACAAAGCCCCTAATAGGAATTTTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCCTCTTCTCCAAAATCCTTCACAGTCCCACTCCTCGGCAATGACCAAAATACCCCTTCCCCTCTTGGCCTGTTTCTGAGAATCCCATCCCATACAGTTCACCATTACTGGCGAAGATTTGACGATGCATTCATGCGCCCTGTGTTCGGAGGACGGGGCTTTGTGCCCTTCGTCCCAGGCTCCCCTACGGAAGACCCAACACAACAATGGCAAATTGAGGAAGTGGAAGCCATTGATGAAAATAAAACCATTCTTATACAGACACCAAGATAG 1518 43.68 MAAPEMMVESGLSIVDFGMELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESITALVIGLCTGTIILLTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDLSHMNSSIVLQFIGNFLYLFIASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAHAFATLSFVAEIFIFLYVGMDALDIENPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLGNDQNTPSPLGLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPTQQWQIEEVEAIDENKTILIQTPR 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21975581 21981927 - Lsi09G013940.1 Lsi09g01394 671007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01394 505 Pfam Sodium/hydrogen exchanger family 33 272 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi09g01394 505 PANTHER SODIUM/HYDROGEN EXCHANGER 3 266 486 - -
Lsi09g01394 505 PANTHER SODIUM/HYDROGEN EXCHANGER 3 18 267 - -
Lsi09g01394 505 Gene3D - 151 202 - -
Lsi09g01394 505 PANTHER SODIUM/HYDROGEN EXCHANGER 266 486 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lsi09g01394 505 PRINTS Na+/H+ exchanger signature 103 117 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi09g01394 505 PRINTS Na+/H+ exchanger signature 118 126 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi09g01394 505 PRINTS Na+/H+ exchanger signature 89 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi09g01394 505 PRINTS Na+/H+ exchanger signature 158 168 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lsi09g01394 505 PANTHER SODIUM/HYDROGEN EXCHANGER 18 267 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02351 Lsi-Chr2:30142221 Lsi09g01394 Lsi-Chr9:21975581 0 dispersed
Lsi02g01171 Lsi-Chr2:14367454 Lsi09g01394 Lsi-Chr9:21975581 1.52E-32 transposed
Lsi02g01865 Lsi-Chr2:24426756 Lsi09g01394 Lsi-Chr9:21975581 2.02E-102 transposed
Lsi02g01866 Lsi-Chr2:24431593 Lsi09g01394 Lsi-Chr9:21975581 2.89E-36 transposed
Lsi06g00185 Lsi-Chr6:1992647 Lsi09g01394 Lsi-Chr9:21975581 0 transposed
Lsi02g02350 Lsi-Chr2:30131308 Lsi09g01394 Lsi-Chr9:21975581 3.14E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01394 - - csv:101215493 870.537