Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01396 ATGTCTCTCAAGAGCATCTTTCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGAACGCCCTGGACCAGAGCTGTTGGGCCAATATGCCTCCGGAGCTTCTCAGGGAGGTTTTGATGAGAATCGAGGCGTCCGAGGCCTTGTGGCCGCCGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGTTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGGATTTGCTTTGCCGTTATAAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAAATGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGGTATGCTCGCTCTTGGAGGCTTGTGATATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCCGGAGCCAAGATCACTAAAAGTCGCTCCACAAGACTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGATATCGAGCAAATGCTCAACAGTTCATGGGTCCAAGGAGAATGCAGTGTATCATGGATGCTATTCCAGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCCACACCAACCGAGCTTTCTTTGAGCAACGTGGAATTGTTTCCTTCGTTCCCTTTCCTAAGGTCAAAATCAAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCACGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCTGAAAACGATCCACCTACACTAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGGTACCCGATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1236 47.17 MSLKSIFQDMRSRSRCVVQDASAPEPRNALDQSCWANMPPELLREVLMRIEASEALWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQDLLCRYKPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRYARSWRLVISNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRYRANAQQFMGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21999286 22002188 + Lsi09G013960.1 Lsi09g01396 671009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01396 411 Gene3D - 27 83 - -
Lsi09g01396 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 411 - -
Lsi09g01396 411 PANTHER TUBBY-RELATED 1 411 - -
Lsi09g01396 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Lsi09g01396 411 Pfam F-box domain 35 82 IPR001810 GO:0005515
Lsi09g01396 411 SUPERFAMILY Tubby C-terminal domain-like 102 411 IPR025659 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Lsi09g01396 411 Gene3D Tubby Protein; Chain A 94 411 IPR025659 -
Lsi09g01396 411 SUPERFAMILY F-box domain 26 79 IPR036047 GO:0005515
Lsi09g01396 411 Pfam Tub family 105 406 IPR000007 -
Lsi09g01396 411 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01499 Lsi09g01396 CCT
Lsi05g01499 Lsi09g01396 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00877 Lsi-Chr7:9959232 Lsi09g01396 Lsi-Chr9:21999286 4.32E-127 dispersed
Lsi08g00555 Lsi-Chr8:13741039 Lsi09g01396 Lsi-Chr9:21999286 3.44E-143 dispersed
Lsi05g01499 Lsi-Chr5:22828303 Lsi09g01396 Lsi-Chr9:21999286 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25945 PF01167 Tub 1.10E-100 CL0395 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01396 K19600 - csv:101203437 724.546