Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01396 ATGTCTCTCAAGAGCATCTTTCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGAACGCCCTGGACCAGAGCTGTTGGGCCAATATGCCTCCGGAGCTTCTCAGGGAGGTTTTGATGAGAATCGAGGCGTCCGAGGCCTTGTGGCCGCCGAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGCCGGAGTTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGGATTTGCTTTGCCGTTATAAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAAATGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGGTATGCTCGCTCTTGGAGGCTTGTGATATCTAATTTCCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCCGGAGCCAAGATCACTAAAAGTCGCTCCACAAGACTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGATATCGAGCAAATGCTCAACAGTTCATGGGTCCAAGGAGAATGCAGTGTATCATGGATGCTATTCCAGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCCACACCAACCGAGCTTTCTTTGAGCAACGTGGAATTGTTTCCTTCGTTCCCTTTCCTAAGGTCAAAATCAAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCACGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCTGAAAACGATCCACCTACACTAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGGTACCCGATCTCCGCTTTCCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 1236 47.17 MSLKSIFQDMRSRSRCVVQDASAPEPRNALDQSCWANMPPELLREVLMRIEASEALWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQDLLCRYKPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRYARSWRLVISNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRYRANAQQFMGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 21999286 22002188 + Lsi09G013960.1 Lsi09g01396 671009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01396 411 Gene3D - 27 83 - -
Lsi09g01396 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 411 - -
Lsi09g01396 411 PANTHER TUBBY-RELATED 1 411 - -
Lsi09g01396 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Lsi09g01396 411 Pfam F-box domain 35 82 IPR001810 GO:0005515
Lsi09g01396 411 SUPERFAMILY Tubby C-terminal domain-like 102 411 IPR025659 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 231 258 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 182 206 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Lsi09g01396 411 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Lsi09g01396 411 Gene3D Tubby Protein; Chain A 94 411 IPR025659 -
Lsi09g01396 411 SUPERFAMILY F-box domain 26 79 IPR036047 GO:0005515
Lsi09g01396 411 Pfam Tub family 105 406 IPR000007 -
Lsi09g01396 411 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01396 K19600 TUB, TULP; tubby and related proteins - csv:101203437 724.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01499 Lsi09g01396 CCT
Lsi05g01499 Lsi09g01396 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00877 Lsi-Chr7:9959232 Lsi09g01396 Lsi-Chr9:21999286 4.32E-127 dispersed
Lsi08g00555 Lsi-Chr8:13741039 Lsi09g01396 Lsi-Chr9:21999286 3.44E-143 dispersed
Lsi05g01499 Lsi-Chr5:22828303 Lsi09g01396 Lsi-Chr9:21999286 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00296 . 1 430 TUB Transcription Factor Family AT1G76900 73.6 3.5e-179 624.8
Lsi05g00201 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.5e-169 592.0
Lsi08g00555 . 1 432 TUB Transcription Factor Family AT1G76900 69.4 9.7e-169 590.1
Lsi07g00258 CCT,ECH 1 413 TUB Transcription Factor Family AT1G76900 50.7 1.0e-114 410.6
Lsi05g00201 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 7.8e-102 367.1
Lsi08g00296 . 173 430 TUB Transcription Factor Family AT1G25280 68.3 3.5e-94 341.7
Lsi08g00555 . 175 432 TUB Transcription Factor Family AT1G25280 70.4 1.7e-93 339.3
Lsi07g00258 CCT,ECH 177 413 TUB Transcription Factor Family AT1G25280 56.2 3.2e-71 265.4
Lsi04g01686 . 179 406 TUB Transcription Factor Family AT1G25280 54.5 3.7e-67 251.9
Lsi09g01396 CCT,ECH 161 411 TUB Transcription Factor Family AT1G25280 50.5 7.1e-63 237.7
Lsi01g00669 CCT,ECH 155 378 TUB Transcription Factor Family AT1G25280 51.2 4.1e-58 221.9
Lsi09g01396 CCT,ECH 105 411 TUB Transcription Factor Family AT5G18680 59.2 2.3e-94 342.4
Lsi08g00296 . 112 430 TUB Transcription Factor Family AT5G18680 53.3 1.9e-85 312.8
Lsi08g00555 . 112 432 TUB Transcription Factor Family AT5G18680 51.5 1.1e-83 307.0
Lsi05g00201 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.0e-83 303.9
Lsi07g00258 CCT,ECH 115 413 TUB Transcription Factor Family AT5G18680 53.0 6.1e-79 291.2
Lsi04g01686 . 115 406 TUB Transcription Factor Family AT5G18680 51.4 2.2e-76 282.7
Lsi05g01499 CCT,ECH 181 461 TUB Transcription Factor Family AT5G18680 54.7 2.5e-72 269.2
Lsi07g00258 CCT,ECH 1 413 TUB Transcription Factor Family AT2G18280 62.3 6.4e-145 510.8
Lsi04g01686 . 1 406 TUB Transcription Factor Family AT2G18280 60.4 2.3e-126 449.1
Lsi05g00201 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.6e-119 425.2
Lsi08g00296 . 1 430 TUB Transcription Factor Family AT2G18280 53.2 1.5e-117 419.9
Lsi08g00555 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 5.0e-113 404.8
Lsi09g01396 CCT,ECH 1 411 TUB Transcription Factor Family AT2G18280 50.1 2.6e-106 382.5
Lsi01g00669 CCT,ECH 1 378 TUB Transcription Factor Family AT2G18280 50.2 7.2e-104 374.4
Lsi07g00877 . 53 385 TUB Transcription Factor Family AT2G18280 50.9 4.7e-95 345.1
Lsi09g01396 CCT,ECH 1 411 TUB Transcription Factor Family AT2G47900 65.2 1.2e-154 543.1
Lsi05g01499 CCT,ECH 84 461 TUB Transcription Factor Family AT2G47900 63.1 7.4e-136 480.7
Lsi08g00296 . 1 430 TUB Transcription Factor Family AT2G47900 55.7 1.3e-132 469.9
Lsi05g00201 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.3e-131 463.8
Lsi08g00555 . 1 432 TUB Transcription Factor Family AT2G47900 55.7 2.7e-130 462.2
Lsi07g00258 CCT,ECH 1 413 TUB Transcription Factor Family AT2G47900 56.0 5.5e-123 438.0
Lsi04g01686 . 10 406 TUB Transcription Factor Family AT2G47900 55.5 1.0e-116 417.2
Lsi07g00877 . 53 385 TUB Transcription Factor Family AT2G47900 52.2 9.1e-102 367.5
Lsi02g02648 . 82 297 TUB Transcription Factor Family AT1G16070 64.1 4.7e-76 281.6
Lsi08g00296 . 67 430 TUB Transcription Factor Family AT1G43640 71.8 3.0e-149 525.0
Lsi05g00201 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Lsi08g00555 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 1.3e-139 493.0
Lsi04g01686 . 68 406 TUB Transcription Factor Family AT1G43640 50.3 7.6e-100 360.9
Lsi07g00258 CCT,ECH 68 413 TUB Transcription Factor Family AT1G43640 50.1 2.4e-98 355.9
Lsi04g01686 . 34 406 TUB Transcription Factor Family AT1G47270 64.4 9.2e-136 480.3
Lsi07g00258 CCT,ECH 34 413 TUB Transcription Factor Family AT1G47270 58.4 4.0e-123 438.3
Lsi05g00201 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Lsi08g00296 . 30 430 TUB Transcription Factor Family AT1G47270 51.5 6.4e-113 404.4
Lsi08g00555 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 2.4e-112 402.5
Lsi07g00877 . 1 385 TUB Transcription Factor Family AT1G53320 70.4 4.3e-154 541.2
Lsi07g00258 CCT,ECH 20 413 TUB Transcription Factor Family AT1G53320 51.5 1.5e-103 373.2
Lsi09g01396 CCT,ECH 107 411 TUB Transcription Factor Family AT3G06380 58.9 5.7e-90 327.8
Lsi05g00201 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.3e-82 301.6
Lsi08g00555 . 116 432 TUB Transcription Factor Family AT3G06380 51.7 1.1e-80 297.0
Lsi08g00296 . 116 430 TUB Transcription Factor Family AT3G06380 51.9 1.4e-80 296.6
Lsi07g00258 CCT,ECH 119 413 TUB Transcription Factor Family AT3G06380 53.5 1.5e-79 293.1
Lsi04g01686 . 119 406 TUB Transcription Factor Family AT3G06380 52.2 1.7e-78 289.7
Lsi05g01499 CCT,ECH 181 461 TUB Transcription Factor Family AT3G06380 56.9 3.3e-74 275.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25945 PF01167 Tub 1.10E-100 CL0395 Lsi TF