Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01402 ATGGGGTCGTTGGCCCCCACAGTTTTGTTGCTTCTCTCTCCCACTGTCTTAGCCGCACATCTCCACCATTTCTCCTTTCCCCTTTTCCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCGGGATCGACAGTACAGCAATTATCTTCTACCTCGAGGAGCACGCCTGAATTCGCATGGAAGCCATTACCTGCTTCTCTTCTTGCGGACCTCACACTCAACTTCCCCGTTTCTCCACCTCCTCCAACCCATCTTCCTACTTCTCCGACCATCTCACTTCCAGCAGACGCTCTAATTTGTACTCCAGACACCTCAATTACAGCCTCGGACCCCCTAAAATGGCTGCTCCTCTTCAAGTTTCTGCATCCTCCACAATTGGTAATTTTATTATACTCTTATACGAACATTGCGATTGATCTTTCGTTTGGCAATGAAGGTGCGTCCGATGAGAGATTGGATACTTCCTCGTCAGCCCTGACCGGAGCGCATGATTTGCTTATAATTGGACCAGGAGTTCTTGGCCGCTTAGTGGCGCAAAAATGGCGGCAGGAACATCCGGGATGTGAAGTTCATGGGCAGACTTTCACAGTGGATCACCATGACGAGTTGATCCAATTAGGGATTCAACCTTCTTTGAAGGGAGGGGATGCGACCCGTCGTTTTCCTTATGTCATTTTCTGTGCTCCTCCTTCCCGAACAGCGGATTATCCTGGTGATGTCAGGCTGGCCGGATCAAGTTGGAATGGAGAGGGTTCCTTTCTTTTTACTTCAAGTTCCGCACCATATGATTGCAATGACAACGGACCATGTGATGAGGACAGTCCAGTCGTACCTATTGGGAGGAGCCCTAGGACAGACGTCCTTCTAAAATCAGAAAAAGTAGTAATCGAGTTTGGTGGTTGTGTACTTCGATTGGCTGGACTCTACAAAGCAGATAGAGGGGCACATACTTATTGGTTAGAGAAGGGGACAGTTGATGTTCGTCCTGATCACATCCTGAATCTTATTCATTATGAGGATGCTGCTTCCCTCTCAGTGGCTATTCTAAAGAAAAAACTTCGTGGACGGATTTTCTTAGGTTGTGATAATCATCCTTTGTCCAGGCAAGAAATCATGGACTTGATGATGAAGAGTGGCAAATTCAGTAAAAAGTTCGAAGGCTTTACTGGAACCAAGGATCCTTTAGGAAAGAGATTGAACAACTCGAAAACTCGAGCAGAAATAGGCTGGGAGCCTAAGTACCCGAGTTTCGGTCAGTTCCTTGAAACCATTTAA 1272 46.7 MGSLAPTVLLLLSPTVLAAHLHHFSFPLFLLLLLLLLSLSGSTVQQLSSTSRSTPEFAWKPLPASLLADLTLNFPVSPPPPTHLPTSPTISLPADALICTPDTSITASDPLKWLLLFKFLHPPQLVILLYSYTNIAIDLSFGNEGASDERLDTSSSALTGAHDLLIIGPGVLGRLVAQKWRQEHPGCEVHGQTFTVDHHDELIQLGIQPSLKGGDATRRFPYVIFCAPPSRTADYPGDVRLAGSSWNGEGSFLFTSSSAPYDCNDNGPCDEDSPVVPIGRSPRTDVLLKSEKVVIEFGGCVLRLAGLYKADRGAHTYWLEKGTVDVRPDHILNLIHYEDAASLSVAILKKKLRGRIFLGCDNHPLSRQEIMDLMMKSGKFSKKFEGFTGTKDPLGKRLNNSKTRAEIGWEPKYPSFGQFLETI 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22035642 22041776 - Lsi09G014020.1 Lsi09g01402 671015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01402 423 PANTHER EPIMERASE-RELATED 144 421 - -
Lsi09g01402 423 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 420 IPR036291 -
Lsi09g01402 423 Gene3D - 159 423 - -
Lsi09g01402 423 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 144 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01402 - - - csv:101221257 537.724
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g360 . . . . . . Bma04g01093 Bma05g01062 . Cmo17g00299 . . . . . . . . . . . . . . Cla06g00501 Cam06g0538 Cec06g0539 Cco06g0542 Clacu06g0523 Cmu06g0525 Cre06g1295 Cone14ag0783 . . . . . . . . . . . Bpe05g00853 . . . Sed09g0638 . . . . . . Cpe12g00261 . Bhi12g02095 Tan06g2633 Cmetu11g1979 Lac12g2382 Hepe03g0124 . Lcy13g0198 . . . . . . . Lsi09g01402 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007731 1 1 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 4 1 36