Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01406 ATGGCGAAACCCTCGAAGCGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGCTCAAGCTCGTCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAACGAGGAAGAAGACGAGGAGGAGCTCGAAGCTGTCGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGACGATTCTGATAACGATACATCACCTGTCGAAAATGGCGAGGAAGAGGATGGAAGTAACGACGGCCATGATGATAAAATCGATATTAGCCGGCGTGAAAAGGCCAGACTAAGAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTAGATGCACAAAATGCTGCTATTGATGCTGATATGAATAACAAGGGGAAGGGACGCTTGAAGTATCTTCTGCAACAAACTGAAATATTTGCTCATTTTGCTAAAGGCGATCATTCTTCTTCCCAGAAGAAAACGAAGGGAAGGGGTCGCCATGCATCAAAACTAACTGAAGAAGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTCTATCTGGGACTGGGAACACTCGTTTACTTTCACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGATTAAATTGGCTCATTCGACTATATGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTTGGCAAGACATTACAAACCATATCCTTGTTGGGCTATCTCCATGAGTACAGAGGCATAACAGGCCCCCATATGGTAGTTGCACCAAAATCTACTCTGGGAAACTGGATGAATGAAATTCGTCGGTTTTGCCCTGTCTTGCGCGCTGTAAAGTTTCTTGGAAATCCCGATGAAAGGAGGGATATACGGGAAAATTTACTGGTTGCTGGGAAATTTGATGTCTGTGTTACCAGTTTCGAAATGGCCATTAAGGAGAAGACTTGCTTGCGTCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCTCATCGAATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAACACCAACTACCGTCTTCTAATCACTGGTACACCGCTTCAGAACAATCTTCATGAACTATGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTGGTTCAACAACTTCACAAGGTCCTTCGGCCATTTCTTCTTCGGAGGTTGAAATCGGATGTAGAGAAAGGCTTGCCTCCAAAAAAGGAAACAATACTCAAAGTAGGCATGTCACAGATGCAAAAACAATACTATCGTGCCTTGCTGCAGAAGGATCTTGAAGTTGTTAACGCTGGTGGTGAGCGTAAACGGCTACTTAATATAGCAATGCAGCTCCGCAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCCGAACCTGGGCCTCCTTACACCACAGGGGACCATCTTATTACTAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAACTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGTCGAATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGGCCAGGAAGTGAAAAATTTGTTTTCTTACTATCAACCAGAGCTGGAGGGCTTGGTATTAATCTTGCTACTGCAGATGTAGTTATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTGATAGAAAGGGCTTACAAGAAACTTGCCCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACGGATGAGGACATTGACAGAATCATTGCAAAGGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGACGAGAATAAGTTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATCGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCAGAATCAGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAAGAGCCCAGGATACCTCGCATGCCTCAGTTGCATGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAATCAGCTGAAAGACACAATAGATGTTGAGGAGCCTGAAGAGGTGGGCGATCCTTTGACTGCTGAAGAGCTGGAAGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAATATGGGCGAAATGATATAAAAAGTATTGCTTCAGAGATGGAAGGAAAAACGGAAGAAGAAGTTGAGAGATATGCGAAGGTCTTTAAGGAGAGATACAAAGAGTTAAATGATTATGATAGAATCATCAAGAACATTGAGAGAGGGGAAGCCAGGATTTCTCGTAAAGACGAAATAATGAAAGCCATTGGCAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTTAAGATCCAGTGCTATCTTAATGATCAACAGATATGCATGGTTCACAAGCTTGGTTACGGAAACTGGGACGAACTGAAGGCAGCATTTCGCACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACGACGCAAGAACTTGCGAGGAGGTGTGATACCTTAATCCGATTAGTGGAGAAAGAAAACCAGGAACATGACGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTCGCAAAGAGTATGACGCCATCAAAACGTTCCTTGGCGAGGCAGACTGAGAGCCCAACTAACCTAAAGAAGCGGAAGCAATTATCAATGGATGATTATGTAAACTCTGGAAAACGGAGGAAGTAA 3192 42.64 MAKPSKRQASSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAADDSDNDTSPVENGEEEDGSNDGHDDKIDISRREKARLREMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLLSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKTCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQCYLNDQQICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRSLARQTESPTNLKKRKQLSMDDYVNSGKRRK 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22059956 22068126 + Lsi09G014060.1 Lsi09g01406 671019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01406 1063 Coils Coil 93 113 - -
Lsi09g01406 1063 Pfam HAND 762 844 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 142 184 - -
Lsi09g01406 1063 Gene3D - 199 414 IPR038718 -
Lsi09g01406 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Lsi09g01406 1063 SUPERFAMILY Homeodomain-like 904 1016 IPR009057 -
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 9 26 - -
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 1007 1063 - -
Lsi09g01406 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Lsi09g01406 1063 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1063 - -
Lsi09g01406 1063 ProSiteProfiles SANT domain profile. 848 900 IPR017884 -
Lsi09g01406 1063 Gene3D - 937 1030 - -
Lsi09g01406 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 413 IPR027417 -
Lsi09g01406 1063 Coils Coil 22 42 - -
Lsi09g01406 1063 Pfam SNF2-related domain 211 478 IPR000330 GO:0005524|GO:0140658
Lsi09g01406 1063 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 1 89 - -
Lsi09g01406 1063 Gene3D - 419 711 IPR027417 -
Lsi09g01406 1063 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 851 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lsi09g01406 1063 Coils Coil 1000 1023 - -
Lsi09g01406 1063 Pfam SLIDE 906 1006 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lsi09g01406 1063 SMART sant 849 898 IPR001005 -
Lsi09g01406 1063 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 1041 1063 - -
Lsi09g01406 1063 SUPERFAMILY Homeodomain-like 852 902 IPR009057 -
Lsi09g01406 1063 SMART ultradead3 194 386 IPR014001 -
Lsi09g01406 1063 CDD SANT 852 896 IPR001005 -
Lsi09g01406 1063 Gene3D iswi atpase 904 936 - -
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 75 89 - -
Lsi09g01406 1063 SMART helicmild6 529 613 IPR001650 -
Lsi09g01406 1063 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1063 - -
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 53 74 - -
Lsi09g01406 1063 CDD SF2_C_SNF 499 624 - -
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 27 42 - -
Lsi09g01406 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 695 IPR027417 -
Lsi09g01406 1063 MobiDBLite consensus disorder prediction 1007 1027 - -
Lsi09g01406 1063 Gene3D - 849 903 - -
Lsi09g01406 1063 Gene3D ISWI, HAND domain 750 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01406 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 1960.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01825 Lsi-Chr1:18756736 Lsi09g01406 Lsi-Chr9:22059956 1.94E-39 dispersed
Lsi09g01338 Lsi-Chr9:21319700 Lsi09g01406 Lsi-Chr9:22059956 1.54E-146 dispersed
Lsi09g01406 Lsi-Chr9:22059956 Lsi10g01079 Lsi-Chr10:15064563 3.37E-132 dispersed
Lsi10g00118 Lsi-Chr10:1848894 Lsi09g01406 Lsi-Chr9:22059956 6.62E-07 dispersed
Lsi09g01406 Lsi-Chr9:22059956 Lsi03g01728 Lsi-Chr3:28649534 7.05E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25946 PF00176 SNF2_N 2.30E-71 CL0023 Lsi TR