Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01410 ATGGAGAAGAGGAAGAGCGAATCTGGACTGGGCCGCAATTATTATTTAAACAAGGCCCAAAAAGTTGGCCCAACAATCGAATGGAGGCCCAAAGGGCCCAGAAAAATGCTGCAAGCGGAAGTCATGAAGCCTTCGACCCGAGATCCGGCGCGAAAGCTCAACGGCGAAAACTTCATAACGAAGGTAATTTCGCCGGCAATTTGTGGAGAAACCTGCGCAATTTGCCTCAGAGAATTGGAGGATCGTACCGCCGCCGTGCTTACAACGTGTATCCACGCCTATTGCATAGGCTGTATTCGCAAATGGAGCAATTTTAAGCGAACTTGCCCTCTCTGTAACGCGCAATTCGATTCATGGTTCACCAAAATCAACCTCTCATCGCGAAGCTTCCGCAAAGAACGGTTGACAACCTCTAATTGTCTCGATAAGCCCAAGGTTGGAGTTGGATCTTCCCGGACAGACGCTCGCGGGATTCTTCAGAGCACGAGGAATGAATTAAATAGGGAAAGACGGTCGGAAAGATCACTTACATGGCGGCGATCATTTGGACGGCGAGGGCCGGAATCTGTGTCTGCTGATGTTGTTGCCCGGCGAAAACTTCAATGGCGAGCAAGAGTTAAGAGCTTGAATATTTTTGCTAATATGTTGTTGGGTTTACAATTTGATAAAGCATATACGGCCGATGTATACAAGCTGTTCCATCTTCGGTCAGATCATAACATATTGGGAAGTCGTGGAGCCAAAGAAGCGATTCTAGAGAGGATTAAACCATGGATTCAAAGGGAGTTACAGGCCATCCTCGAGGACCCAGATCCAACTATAATTGTTCATCTGGCTACCTCACTATTTGTGGCAAGACTTGAAGCTCCTTCCTCACAGCTTAATGCTGAAGATGACCTTCTTTCGCCGTTGCGTCCTTTTCTCTTTGAGAAGACTGATTTGTTTTGGCATGAACTAAGGTACATGACTCATTAA 975 46.77 MEKRKSESGLGRNYYLNKAQKVGPTIEWRPKGPRKMLQAEVMKPSTRDPARKLNGENFITKVISPAICGETCAICLRELEDRTAAVLTTCIHAYCIGCIRKWSNFKRTCPLCNAQFDSWFTKINLSSRSFRKERLTTSNCLDKPKVGVGSSRTDARGILQSTRNELNRERRSERSLTWRRSFGRRGPESVSADVVARRKLQWRARVKSLNIFANMLLGLQFDKAYTADVYKLFHLRSDHNILGSRGAKEAILERIKPWIQRELQAILEDPDPTIIVHLATSLFVARLEAPSSQLNAEDDLLSPLRPFLFEKTDLFWHELRYMTH 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22097973 22102013 + Lsi09G014100.1 Lsi09g01410 671023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01410 324 PANTHER TOPOISOMERASE I-BINDING, ARGININE/SERINE-RICH A-RELATED 58 322 - -
Lsi09g01410 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TOPORS 58 322 - -
Lsi09g01410 324 Pfam Ring finger domain 71 113 IPR001841 -
Lsi09g01410 324 ProSitePatterns Zinc finger RING-type signature. 90 99 IPR017907 -
Lsi09g01410 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 172 IPR013083 -
Lsi09g01410 324 SMART ring_2 72 112 IPR001841 -
Lsi09g01410 324 ProSiteProfiles Zinc finger RING-type profile. 72 113 IPR001841 -
Lsi09g01410 324 SUPERFAMILY RING/U-box 66 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01410 - - - bhj:120067939 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01410 Lsi-Chr9:22097973 Lsi10g01089 Lsi-Chr10:15186751 1.77E-06 dispersed
Lsi09g01410 Lsi-Chr9:22097973 Lsi08g00989 Lsi-Chr8:18348886 3.13E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g344 . . . . . . . . Cmo08g01187 . . . . . . . . . . . . . . . Cla06g00495 Cam06g0532 Cec06g0532 Cco06g0536 Clacu06g0517 Cmu06g0519 Cre06g1289 . . Cone7ag0167 Cone4ag0163 . . Chy11g01483 . . . . . . . . . Sed04g1815 . . Cma08g01213 . Car08g01085 . . Cpe17g00010 Bhi12g02088 Tan06g2640 Cmetu11g2206 . Hepe03g0118 . Lcy13g0193 . . . . . . . Lsi09g01410 . . Cme11g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011367 0 2 0 0 0 1 1 1 1 1 1 1 1 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 30