Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01416 ATGTTGAAACGAAATCTCCATTTCGCCCTCACCAGGCCCTGCCTTTCCCGCGAAAACGAACGGCTATCTTTTCAAACCATTCAAAATCTCAGTCGCCATCTTCGAAATTGCAACGATTTGGTTTCTTCAATTTCGACTCACTCCATAGCCCTAAAGCTTGGATTCTTAAACCATACTGTCGCCGTCAACCATCTCATCAATTGCTATGTTAGATTCCGCAATGTTGCAACCGCACACCGACTGTTCGACGAAATGCCCAACCCAAATGTTGTGTCATGGACCTCACTCATGGCTGGTTACATCGACAATGGTCGGCCGAATACCGCTCTTTTATTGTTCAGGGCAATGTCGAGAAGTTCCGTTGTTCCGAATGACTTCACTTTCGCAACTGCGATTAAGGCCTGTTCGATCCTTTCGAATTTAAGACATGGTGAAAAGTTCCATGCCTATGTTGAGATTTTTGGTTATGGAGGTAATATTGTGGTTTGTTCTTCTCTTATTGCTATGTATGGGAAATGTAATGATGTTGTTAAAGCTAGGAGTGTCTTTAATTCCATGTCTTGTAAGAATATTGTTTCTTGGAATTCAATGATTGCTGCTTATGCTCAGAATGCTCACGGCGACGATGCATTAAAAGTATTTAGGGAATTCAGTAGTTTGAGTTCTGAACATCCAAATCCTTACATGTTAGCTAGTGTAATTAGTGCTTGTGCAAGCTTGGGAAGGCTGGTTTCCGGGAAAGTTGTGCACGGTGCAGCGATCCGTCTTGGGTGTGATTCGAGCGACGTAGTTGCGAGTGTGTTGGTTGATATGTATGCTAAATGTGGGAGTCTTGAGTATTCTGATAAGGTTTTTAACAGAATTTCAAACCCTTCTGTTATTCCTTATACTTCAATAATTGTGAGCACAGCAAAGTATGGATTTGGGAGAAAGTCTCTTCAACTCTTTGAAGAAATGGTGAGAAAAGGATTGAAACCTAATCATATCACTTTTGTTGGAGTCTTGCATGCTTGTAGCCATTCAGGGCTTCCTAATGAGGGCCTTGATTATTTGACATCCATGTATGAGAGATATGGAATAATGCCCGAGACTAAGCATTATACGTGCGTTGTCGACATGCTAGCACGAGCCGGGCAGCTAGATAAAGCCTACCAACTAGCAAAGTCGATGGAGGTAGCATCCGATGACAAGGCATTGTTGTGGGGAGCATTGCTTTCAGCTAGTAGGTGTCATGGCAGGGTAGATATTGCAGCTAAAGCTTGTCAGCAACTTGTGAATTCCAATAGACAAGTCGCCGGTGCATACGTTACTTTGTCAAATGCTTATGCATCTGCTGGGGATATGGAGAAGGCTCATAGACTCCGAGTTGAGATGAAACATACCGGAGTTCAGAAAGAACCAGGCTGCAGTTGGATCGAAATAAAAGATTCGAGTTATGTATTCTATGCTGGGGATATAACGTCGTGCCCACGAGGCGATGAAGTGTTGCGTTTACTAAGAGAGTTGGACCGGAAAATGAAGGAGCGAGGTTACGTAAGAGGAAGCAAAGGGTTGGTGTTTGTTGATATAGAAGAGGAGGCAGAGGAAGAAAAAGTTTGGTTGCACAGTGAAAGATTGGCATTGGGATTTGGTTTGATTAGCATTTCAAAAGGACTTACAATAAGAATAATGAAGAACTTGAGAATGTGCAGTGATTGTCATGAGGCTTTCAAGCTTATAAGTGAGATTGTGGAAAGAGAGTTTGTAGTTAGAGATATCAATAGATTTCATCATTTCAAAAGTGGTTGTTGTACTTGCAATGATTTCTGGTAA 1812 42.11 MLKRNLHFALTRPCLSRENERLSFQTIQNLSRHLRNCNDLVSSISTHSIALKLGFLNHTVAVNHLINCYVRFRNVATAHRLFDEMPNPNVVSWTSLMAGYIDNGRPNTALLLFRAMSRSSVVPNDFTFATAIKACSILSNLRHGEKFHAYVEIFGYGGNIVVCSSLIAMYGKCNDVVKARSVFNSMSCKNIVSWNSMIAAYAQNAHGDDALKVFREFSSLSSEHPNPYMLASVISACASLGRLVSGKVVHGAAIRLGCDSSDVVASVLVDMYAKCGSLEYSDKVFNRISNPSVIPYTSIIVSTAKYGFGRKSLQLFEEMVRKGLKPNHITFVGVLHACSHSGLPNEGLDYLTSMYERYGIMPETKHYTCVVDMLARAGQLDKAYQLAKSMEVASDDKALLWGALLSASRCHGRVDIAAKACQQLVNSNRQVAGAYVTLSNAYASAGDMEKAHRLRVEMKHTGVQKEPGCSWIEIKDSSYVFYAGDITSCPRGDEVLRLLRELDRKMKERGYVRGSKGLVFVDIEEEAEEEKVWLHSERLALGFGLISISKGLTIRIMKNLRMCSDCHEAFKLISEIVEREFVVRDINRFHHFKSGCCTCNDFW 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22165768 22167579 - Lsi09G014160.1 Lsi09g01416 671029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01416 603 Pfam Pentatricopeptide repeat domain 291 338 IPR002885 -
Lsi09g01416 603 Gene3D Tetratricopeptide repeat domain 266 437 IPR011990 GO:0005515
Lsi09g01416 603 Gene3D Tetratricopeptide repeat domain 8 139 IPR011990 GO:0005515
Lsi09g01416 603 Gene3D Tetratricopeptide repeat domain 140 251 IPR011990 GO:0005515
Lsi09g01416 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Lsi09g01416 603 TIGRFAM PPR: pentatricopeptide repeat domain 62 85 IPR002885 -
Lsi09g01416 603 TIGRFAM PPR: pentatricopeptide repeat domain 161 192 IPR002885 -
Lsi09g01416 603 TIGRFAM PPR: pentatricopeptide repeat domain 91 124 IPR002885 -
Lsi09g01416 603 TIGRFAM PPR: pentatricopeptide repeat domain 192 220 IPR002885 -
Lsi09g01416 603 TIGRFAM PPR: pentatricopeptide repeat domain 296 327 IPR002885 -
Lsi09g01416 603 Pfam PPR repeat family 88 135 IPR002885 -
Lsi09g01416 603 Pfam DYW family of nucleic acid deaminases 517 603 IPR032867 GO:0008270
Lsi09g01416 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lsi09g01416 603 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 28 582 - -
Lsi09g01416 603 Pfam PPR repeat 60 86 IPR002885 -
Lsi09g01416 603 Pfam PPR repeat 366 391 IPR002885 -
Lsi09g01416 603 Pfam PPR repeat 192 217 IPR002885 -
Lsi09g01416 603 Pfam PPR repeat 161 191 IPR002885 -
Lsi09g01416 603 Pfam E motif 411 473 IPR046848 -
Lsi09g01416 603 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Lsi09g01416 603 PANTHER OS12G0163600 PROTEIN 28 582 - -
Lsi09g01416 603 SUPERFAMILY TPR-like 25 454 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01416 - - - csv:101222645 1089.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01416 Lsi-Chr9:22165768 Lsi02g01175 Lsi-Chr2:14465681 4.21E-15 dispersed
Lsi09g01416 Lsi-Chr9:22165768 Lsi05g00088 Lsi-Chr5:1603644 1.20E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g329 . Blo12g00020 . . Bpe04g01129 . . . Cmo08g01191 . . . . . . . . . . . . . . . Cla06g00491 . . . . . . . . . Cone4ag0156 . . Chy11g01486 . . . . . . . . . . . . Cma08g01218 . Car08g01091 . . Cpe17g00013 Bhi12g02081 . . . Hepe03g0114 . Lcy13g0186 . . . . . . . Lsi09g01416 . . Cme11g01993
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011153 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 0 1 1 0 1 1 1 1 1 29