Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01429 ATGGAAGGCTCTTTAGGGCAAAAGCACAAACCTCAGGAGTTCACTCTTGTTTCGATTTCTGAGCTTGCTTCTTCGTCTTCCTCCTCGTCCTCTTCGTCTGCGCCGGTGGTTGCACGGTTCAGCGGCGATTCCGGCGCGGCAGAGCTTCGGTTACGGCAGGAGGCTGATTCTGATGACCTTGCTTTCGATATTCGGACTTCTCAGATATTTCGGTTAGGCCCTGTTCAGTCAGTTTGCATTTCCGAAGGCGATGCCAGTGAAGAGAAATCTCATTCCAGAGGAGTTACCATTCAATTTAGAAACGAGGAAGAGAGCAGTGCGTTTCATTCTGCTTTTGATAAGAGGAAAAAGGATGATATTGTCCAAGGGACCACACGTTTACCAAATGGTGAAATTTCCTTCTTAAAAAGCAAGTTCGATGATAAAATAGAATCATCATCTGCCAAGATGTACTTCCACTACTATGGACAACTTTTACATCAACAAAATATGTTGCAGGATTATGTGAGGACAGGAACATATTATGCAGCAGTAATGGAAAATCGTGCTGACTTCACGGGCCGAGTGGTTGTCGATGTTGGTGCTGGTAGTGGTATTTTGTCATTATTTGCTGCTCAGGCTGGCGCAAAGCATGTTTATGCTGTGGAAGCATCTGAAATGGCTGAGTATGCTCGTGTATTAATTGCAGGGAACCCTGCCTTGAGTCAACGAATTACAGTAATTAAAGGCAAAGTTGAGGATGTAGAATTACCTGAGAAAGCAGACATTTTAATCTCAGAGCCAATGGGCACCTTATTGGTCAACGAAAGAATGCTGGAATCGTACGTGATCGCGAGGGATCGTTTTTTGCACCAAAATGGAAAGATGTTCCCAACAATAGGAAGGATTCACATGGCACCTTTCAGTGATGAATATCTATTTGTTGAAGTAGCTAACAAGGCACTCTTTTGGCAGCAACAAAACTATTATGGTGTTGATTTGACAGCCTTGCATGGATCGGCATTTCAAGGCTATTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGATTATTGGTGGCGCCTTCAATATCTCATGTTTTAGACTTCACAAATATCAAGGAAGAGGAATTGTATGACATAGATATTCCTCTGAAGTTCGTTGCTACCGTGGGTGCCAGAATCCATGGACTGGCCTGCTGGTTTGATGTATTATTTAATGGCAGCACCGTGCAGAGGTGGCTTACCACTGCCCCAGGTGCACCGACAACCCATTGGTACCAGTTACGTTGTGTCCTTTCCCAGCCGATTTATGTCATGGCAGGACAGGAAATTACCGGCCGACTTCACATGGTTGCTCACAGTGCTCAGAGTTACACGATTTATTTGACTCTATCAGCCAAAATGTGGGGCCCTGGTGCCGAGCAAGGAGGAATACTTCAATCGTCCTCGTGCAAACTCGACCTGAAAGAGCCCTACTATAGAATGTCCCAACCACAAGCCTACCCCATGGTTCAAGATCAGCAACAACATCAGCTAATTCCACCGCAGGCCCACAATGTTTCTTACGAGGAAGCATCTCTTATGCCATTATTTACTGGAAATTCAAACCTCATTTCACAAGCTTCCTTCCCCGCTGGTTATGGCGGAGCCAAGCCACTTCTTTCAGCTTCATCCTCCATTTCCATTTCATCTCGTTCCAAGCTCACACGAAGAAAAAATCACTTGCGCATCAAAATTCTCAAAACCCTAACTAAACCTCCTCCATTCACTGTCTCTCCCATTCCTCCTGAAAGCGAACCTTCAACTCCGATCGTATCGCCGGAAATCTCAGGTCCTTCCGGCGTCGAAACCGAGGTTTTATCTCCGGCGGAATCTTGCCCTTCCTCCACAGCCACGGACGGCGAATCTCGACTCTCCGCGAGCTCGAACGCTGCCTCGTTGTTTAATTTTGACGTTGCCAAATTTTCTTGGGGAAGTTTTGTCAGGTTTGGCGTTTACATGCTTGCTGTTTTTGCGTTTCAGACAATTTGTACTGTGTGGGTTTTAGAATATGGTAGTTCGATTAAGGAAGATAAGAATTTAGATGAAGATTTGAGTGTTAGGAGAAAGAGCGGAAGAGAAGTGTTGTTGAATGGAAATGAAAGAATTGTCCTTGGAAATTTCGGGTCTAAAACGAACAAGTTGGTTTATTTGGAGGAAACGAAAATGAGGGAAAAAATTGAAGAGATCAGATTGATGGCTAGGGCAGCAAGGATAGAGGAGAAAAATAAAATATCTGATGATTTTGAGGAACACGACATGGAGGATAGAAATGCAATTACCAGGGTTAGGATTGGTATCGTGAAAGAGGTTGATGCTCGACTTGTTAAGTTAGAGAAGAGGCTAAATTCTGCCAAAGAAAAGACACCGGATTCACCCGTAAATTATTTGCTCAAGTCTGAAAATGTTGAGGAGGCAGTTGAAAGGAGGAATGGTTTCAATGGTGAAGAGAGGAATAAGAGTCTAATATTTAAGAAAAAGTTGAAATACAGAAACTTTTCTAGTGATAGAATGAAGAAGCCTAAGGGGTTTCAAGGTTTTGTATCTAATGGGAAAAAGAGTGGCTCAAATGGCAAGGGTACAACAGTGGAAGGTGCAAATTTTGTTGGTGGTAACATGAGAGTGAAGGAAACCGAGAAACGAGTAGATAACGAAATCAAGGATAGTGTTTCGGAGATGTTCGGAGATGATGGCACAAATTTCACAAGCAACGGATCAGGATTACCACAGAAAAACGATAGAATGAATTTGGAGCTTGGAATTAAGGTTTCAAGTTCGAAGAACAAACCAAGTAATGGTGTCATTCAGGAGACTTTTTCAGTTGAGATATCAAAGTCACAGGATTTAAAAGATGCAATGGAGAAAAGATCTTCGGTGAGTTCAAATGATAGTGTTGGAAACAAATCTGAGGCTGGTGAAGATAGAGGCAAACAATCAAACAAGAAGGCGGATTTATGGTGGTTGAATCTTCCTTATGTTCTAGTTATTTTTATGAATCGAGGTTCCGATGATGAAGAACTAGAAGGACTTTTCACCTTAAAGATTCCTTCCAAGACACAGGATATTGAGGAATCTACATATACAGTTGCTTTTGAAGACCATGTCGATGCAAATAACTTCTGTTATCTTCTGGAATCTTTTTTTGAAGAGCTCGACAATTTCACAACCGACGTGGTTCCTCTGCCAACAAAAGAACTTGAGAAGGTCATAAAATCACATACAAGTAAAATGATTGTTGTGAAGAAGAGGCAACTGCAGCTCTATGCTGGTCAACCGTTTGCCGATGTCGAGACGGCTTTATGTGCTTTGGTTGAACGAAATGAGAATGTTATTTCTTTACATTCCAGTTAG 3372 42.67 MEGSLGQKHKPQEFTLVSISELASSSSSSSSSSAPVVARFSGDSGAAELRLRQEADSDDLAFDIRTSQIFRLGPVQSVCISEGDASEEKSHSRGVTIQFRNEEESSAFHSAFDKRKKDDIVQGTTRLPNGEISFLKSKFDDKIESSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVMENRADFTGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARVLIAGNPALSQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLHQNGKMFPTIGRIHMAPFSDEYLFVEVANKALFWQQQNYYGVDLTALHGSAFQGYFSQPVVDAFDPRLLVAPSISHVLDFTNIKEEELYDIDIPLKFVATVGARIHGLACWFDVLFNGSTVQRWLTTAPGAPTTHWYQLRCVLSQPIYVMAGQEITGRLHMVAHSAQSYTIYLTLSAKMWGPGAEQGGILQSSSCKLDLKEPYYRMSQPQAYPMVQDQQQHQLIPPQAHNVSYEEASLMPLFTGNSNLISQASFPAGYGGAKPLLSASSSISISSRSKLTRRKNHLRIKILKTLTKPPPFTVSPIPPESEPSTPIVSPEISGPSGVETEVLSPAESCPSSTATDGESRLSASSNAASLFNFDVAKFSWGSFVRFGVYMLAVFAFQTICTVWVLEYGSSIKEDKNLDEDLSVRRKSGREVLLNGNERIVLGNFGSKTNKLVYLEETKMREKIEEIRLMARAARIEEKNKISDDFEEHDMEDRNAITRVRIGIVKEVDARLVKLEKRLNSAKEKTPDSPVNYLLKSENVEEAVERRNGFNGEERNKSLIFKKKLKYRNFSSDRMKKPKGFQGFVSNGKKSGSNGKGTTVEGANFVGGNMRVKETEKRVDNEIKDSVSEMFGDDGTNFTSNGSGLPQKNDRMNLELGIKVSSSKNKPSNGVIQETFSVEISKSQDLKDAMEKRSSVSSNDSVGNKSEAGEDRGKQSNKKADLWWLNLPYVLVIFMNRGSDDEELEGLFTLKIPSKTQDIEESTYTVAFEDHVDANNFCYLLESFFEELDNFTTDVVPLPTKELEKVIKSHTSKMIVVKKRQLQLYAGQPFADVETALCALVERNENVISLHSS 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22294199 22307169 + Lsi09G014290.1 Lsi09g01429 671042

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01429 1123 MobiDBLite consensus disorder prediction 953 984 - -
Lsi09g01429 1123 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 154 465 IPR029063 -
Lsi09g01429 1123 MobiDBLite consensus disorder prediction 856 870 - -
Lsi09g01429 1123 MobiDBLite consensus disorder prediction 582 629 - -
Lsi09g01429 1123 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 144 459 IPR025799 GO:0016274|GO:0018216
Lsi09g01429 1123 Gene3D Vaccinia Virus protein VP39 132 291 IPR029063 -
Lsi09g01429 1123 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 498 IPR025799 GO:0016274|GO:0018216
Lsi09g01429 1123 Pfam Ribosomal protein L11 methyltransferase (PrmA) 186 259 - -
Lsi09g01429 1123 Coils Coil 775 795 - -
Lsi09g01429 1123 MobiDBLite consensus disorder prediction 902 918 - -
Lsi09g01429 1123 MobiDBLite consensus disorder prediction 582 596 - -
Lsi09g01429 1123 MobiDBLite consensus disorder prediction 898 919 - -
Lsi09g01429 1123 CDD AdoMet_MTases 190 298 - -
Lsi09g01429 1123 Gene3D - 293 501 - -
Lsi09g01429 1123 MobiDBLite consensus disorder prediction 848 873 - -
Lsi09g01429 1123 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 1 498 - -
Lsi09g01429 1123 Pfam Protein of unknown function (DUF3110) 1011 1091 IPR021503 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01429 K05931 CARM1, PRMT4; type I protein arginine methyltransferase [EC:2.1.1.319] - csv:101217747 962.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g02126 Lsi-Chr5:28082063 Lsi09g01429 Lsi-Chr9:22294199 1.01E-11 dispersed
Lsi09g00850 Lsi-Chr9:9793977 Lsi09g01429 Lsi-Chr9:22294199 6.26E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g304 . Blo12g00018 . . Bpe04g01134 . . . . Cmo17g00313 . . . . . . . . . . . . . . Cla06g00479 Cam06g0514 Cec06g0515 Cco06g0518 Clacu06g0498 Cmu06g0500 Cre06g1271 . . . . . . Chy11g01508 . . . . . . . . . Sed04g1796 . . . . . Car17g00298 Cpe12g00276 . Bhi12g02060 Tan06g2675 Cmetu11g2440 Lac11g0838 Hepe03g0103 . Lcy12g0730 . . . . . . . Lsi09g01429 . . Cme11g02010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005574 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 5 1 1 38