Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01430 ATGGGCGCCCGAACTAGCAATCGTAAGCGCGACGACGAGTGTTTGAGTCTTAATCGTTCGTATTCATCTTTGAGATCACCGGATTTTCACGTCTCCAAGAAACCTAAATTTTCTACTATGTCTTCGGATCGGCCAGTTGTTTCATCGAACTCTACAGTGGCTAGGCTCTCTCGGTATCCTGAAGAAACTTCGCAATTGCGTCGAGAAGTTCATGGCCCTTGCAGATTGTTCAAATTTGGGCTCTCGAGGAGCTTCCATAGGTTTTGGGAGTCTAAAAATAGGGAGTTGTCGGAACAGGATGAGGTGGGGAATATCTTGTCGTACAATTACCAGATTGCGAAGAGTCGTGCAATTGGTTCATTGCGGTCCTTCCCCAATGATGTCATTGAATTGGATTCAGACTCGCAAACTGAAAGAGACTCTTCTGGAGATTTGAAGAACGAAGACGACGTTGAGGTAATTGAAGATGATAAGCAGGACAAGAGGCCTCGTGAGGTTGATACAGTGGAGGAGTTGGATGCGAAGGCGATGAATGTTCATCAGCCATCGTTGTCTTTGGTAGTTGTAGATTTGACAAATGACAATTCGAAAGTTGAAAACGCCGAGAAAATGCTTGGTGCTTTGTCACTGGACCGGGATATGTCCAGTGTTTCTGCTTACAAAAAGTTGCTACAGAGTGTGGAAAAACGAACATCGAGGTTGAAAAGCTTGGATTTTGAAATTGAGTTGAATGAGAAGCGTCGGTCAATTCTTCAATCGCAAACTCCAAAGAAGAAACCTCTTGATGAGATTCCGCAGGAACTTTTCACACCTCTTACTAAGGAGGAGGAAGCCGAGGTTGAACGTGCCCTCTCTACTAACCGGTACTGTATAATGCAGTTGAGGAGGGTTTTGGTTGCTCATGAGAATTCAAATATTGAGATTACTGGGGAAACTTTGCAGTGTCTGAGACCAGCTGCTTGGTTAAACGATGAGGTGATTAATTTGTATCTTGAGTTGCTGAAAGAAAGGGAAAGAAGGGAGCCAGAGAAGTATCTGAAATGTCATTTCTTTAATACCTTCTTCTATAAAAAGTTAAATGGGAGGAATGGCTACGATTACAGATCTGTTAGAAGATGGACCAGCCAAAGAAAGTTGAAATATGAACTCATAGATTGTGATAAAATATTTGTCCCCATCCATAGAGAAATACACTGGTGCCTAGCAGTAATCAACAAGAAAGAGAAGAAGTTTCAGTATCTTGATTCTCTCAAGGGAATGGATTCTCGTGTTTTAAAAACACTGATATTCCTATTTCTTAGTTTGGTCGCAGTTTCAACCTTTGATATTTTAAGTTTTGCTTTTTCATTTTTAGAAAAGAAGGGTTTGATTTTATCTTCCCTTATGATTGCCCTAGCTTTGTTCGAATTCTGTGATTGTCATGTTATAATTTTGATCATATGTACCCAGGCGAGATATTTTGTAGATGAGGTGAAGGACAAGAGTGGAAAAGATATTGATGTAAGTTCTTGGGCACAAGAATTTGTCGAAGACCTTCCCGAGCAAGAAAATGGGTTTGATTGTGGCATGTTTATGATCAAGTATGCTGATTTTTATAGTAGAGGTTTGAATCTCTGTTTCAAGCAGGAACACATGCCTTACTTCCGACTTAGAACAGCCAAGGAAATTTTGAAATTAAGAGCTAACTGA 1689 40.73 MGARTSNRKRDDECLSLNRSYSSLRSPDFHVSKKPKFSTMSSDRPVVSSNSTVARLSRYPEETSQLRREVHGPCRLFKFGLSRSFHRFWESKNRELSEQDEVGNILSYNYQIAKSRAIGSLRSFPNDVIELDSDSQTERDSSGDLKNEDDVEVIEDDKQDKRPREVDTVEELDAKAMNVHQPSLSLVVVDLTNDNSKVENAEKMLGALSLDRDMSSVSAYKKLLQSVEKRTSRLKSLDFEIELNEKRRSILQSQTPKKKPLDEIPQELFTPLTKEEEAEVERALSTNRYCIMQLRRVLVAHENSNIEITGETLQCLRPAAWLNDEVINLYLELLKERERREPEKYLKCHFFNTFFYKKLNGRNGYDYRSVRRWTSQRKLKYELIDCDKIFVPIHREIHWCLAVINKKEKKFQYLDSLKGMDSRVLKTLIFLFLSLVAVSTFDILSFAFSFLEKKGLILSSLMIALALFEFCDCHVIILIICTQARYFVDEVKDKSGKDIDVSSWAQEFVEDLPEQENGFDCGMFMIKYADFYSRGLNLCFKQEHMPYFRLRTAKEILKLRAN 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22308160 22314910 + Lsi09G014300.1 Lsi09g01430 671043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01430 562 ProSiteProfiles Ubiquitin-like protease family profile. 306 532 IPR003653 GO:0006508|GO:0008234
Lsi09g01430 562 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 1 434 - -
Lsi09g01430 562 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 1A 482 561 - -
Lsi09g01430 562 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 1 434 - -
Lsi09g01430 562 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 482 561 - -
Lsi09g01430 562 Gene3D Adenoviral Proteinase; Chain A 260 560 - -
Lsi09g01430 562 Pfam Ulp1 protease family, C-terminal catalytic domain 321 424 IPR003653 GO:0006508|GO:0008234
Lsi09g01430 562 Pfam Ulp1 protease family, C-terminal catalytic domain 479 556 IPR003653 GO:0006508|GO:0008234
Lsi09g01430 562 SUPERFAMILY Cysteine proteinases 269 561 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01430 K08592 SENP1; sentrin-specific protease 1 [EC:3.4.22.68] - csv:101210787 749.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01430 Lsi-Chr9:22308160 Lsi08g01025 Lsi-Chr8:18813324 3.95E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g298 . . . Bda08g00290 . . . Bma05g01035 Cmo08g01202 Cmo17g00315 . . . . . . . . . . . . . . . . . . . . . Cone14ag0762 Cone15ag0771 . . . . Chy11g01509 . . . . . Bpe05g00837 . . . Sed09g0246 . . Cma08g01227 Cma17g00326 Car08g01103 Car17g00300 Cpe12g00277 . Bhi12g02057 Tan06g2678 Cmetu11g0237 . Hepe03g0102 . . . . . . . . . Lsi09g01430 . . Cme11g02011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006082 1 3 1 1 1 1 3 1 1 1 0 1 1 1 1 2 1 2 2 1 1 2 1 1 2 1 1 2 1 1 39