Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01431 ATGGGCGGCCAGATGCAGCAAAGCAATGCTGCGGCGGCGACTGCCTTTTACGACCACGCCGGCGGTGGGACCCTGCATAATGCAGGCCCCACTAACGACGCCGGTGATGCGGTCATGGCTCGGTGGCTCCAGTCCGCTGGCTTGCAGCATCTGGCCTCTCCCTTGGCTGATCAGCGCTCCCTCCTCATGCAGAGTTATGGAGCACAATCTGCTGAAGAGAAACAGAGGCTTTTAAAACTGATGAGAAACCTGAATTTTGGTGGGGAGTCTGGATCTGAGCCACATACACCTACTGCCCAAGCTTCCGGAGTACTGGGTGCAATGGATGGCTATTATTCTCCAGAATTTAGGGGAGATTTTGGTGCTGGACTTTTGGATCTCCATGCTATGGATGATACCGAGCTCTTGTCTGAGCACGTTATCTCAGAACCATTCGAGCCATCACCATTCATTCCTAGTGGTACTAGAGCATTTGAGGATGAATTTAATATAGCTAGCAGCAGGCAGCAAAGAAGCCAAGCTGATGAAGATGCCGTGGCTATGTTACCTGTGATTGAAAAAGAGAATGTTGCCAGAGAAAATAACGTGGCTAAAATCAAAGTTGTGGTGCGAAAGAGACCATTAAACAAGAAGGAGCTTGCTCGTAAGGAGGATGATATTGTATCAGTATGCGACAATGCCTCTTTAACTGTTCATGAACCAAAACTAAAGGTTCCTTTACTTTTATCTCATGACTTTTATGTGGACTTAACTGCATATGTGGAGAAGCATGAATTCTGCTTTGATGCAGTTCTTGATGAGTATGTTACCAATGATGAGGTTTATAGGGTTACTGTGCAACCAATTATTCCCATCATCTTTGAACGGACAAAGGCTACATGTTTTGCTTATGGTCAAACAGGCAGTGGCAAGACGTTTACAATGCAGCCGTTACCTCTTAGAGCTGCTGAAGACCTCGTTAGATTGTTACATCAGCCAGTTTATCGTAATCAGAGATTCAAGTTGTGGCTTAGCTTTTTTGAGATATATGGTGGAAAGTTGTTTGATCTACTCAGTGACAGAAAGGACAGAAAATGCCATTCATCCATAGTGAGATTGTATTATGTTTATCACAAATCATGGGCATCTAGGAAGCTTTGCATGAGAGAAGATGGGCGGCAGCAGGTTTGTATTGTTGGACTTCAAGAATTTGAAGTGTCTGATGTACAAATTGTTAAAGAATATATCGAGAAGGGAAATGCAGCTAGGAGTACAGGTTCCACTGGTGCCAATGAGGAGTCTTCAAGGTCACATGCTATATTGCAACTTGCTGTTAAGAAACATCCTGAAGTAAAGGAATCCAGAAGGAACAATGACGGAAATGAGTTGAAAAGTGGGAAGCTTGTTGGGAAAATCTCTTTTATTGATTTGGCTGGTAGCGAAAGAGGTGCTGATACAACTGATAATGACCGTCAGACAAGGATTGAGGGAGCAGAAATCAACAAAAGTCTTTTGGCTTTGAAGGAATGCATTCGTGCCTTGGACAATGATCAGATTCATATACCCTTCCGTGGAAGCAAACTAACAGAAGTTCTCCGTGATTCTTTTGTTGGCAACTCAAGAACTGTTATGATATCATGCATTTCTCCGAATGCTGGTTCATGTGAACATACTCTCAACACTTTGAGATATGCTGATCGGGTCAAAAGTTTGTCCAAAAGTGGAAATGCAAAAAAGGATCCGGCTGTTAGTTCCAGTGTATCAATATCTAGAGATGTTTCTTCAGCCCCGTCTATTCCAATTCCAACTGAAGCAGAAGATATGAATATGCTGCGGCAAGAGGTGAAATTAGGGGAATTGAGCAGAAGGGTTGCAGAGAAAGAGAGTCTCTCCTCTTCCAACTTTGACATGCCAACTACTGCTTTGCCATCAAGCAATAGCTTTCATGCACGAGAAGAAAAAAGTGGAGGCATAACTGGAACTTCTGCATCATTTGACAAGGAGCCACCTGAAATGAGAAATGCTCATAGTGATCCAACTGGTCGAAAGATACCCATGTATTCCCACAACTTAAATGATACAGAGGAGAAGGTGCAAAAGGTATCACCACCCCGAAGGAAATCAACCCGAGATGAAAAATCAGAAAAATTGGGGAGCTGGCAGAAGAAAGATAACGCTGTGCCTGATGTCTCAACTGCAAGCTCCAAGCAGTATGGTCCAGGAATTTCTAATGCAAATGATGCTGGATCCAGAAAGTCTGAACCTGAGCCAACTTCTGATGGGAATATTAATGCAATACTGGAGGAAGAAGAAGCGTTAATTGCTGCTCATCGAAAAGAAATTGAGGACACCATGGAGATAGTTCGTGAAGAAATGAAACTGTTGGCAGAAGTGGATCAACCTGGAAGCCACATTGAGAACTATGTGACTCAGTTGAGTTTTGTGCTGTCTCGAAAGGCCGCTGGTTTGGTTAGTCTTCAAGCACGCCTTGCAAGGTTCCAGCATAGACTTAAAGAACAAGAAATACTGAGCCGAAAAAGAGTACCGCGTTAA 2532 43.68 MGGQMQQSNAAAATAFYDHAGGGTLHNAGPTNDAGDAVMARWLQSAGLQHLASPLADQRSLLMQSYGAQSAEEKQRLLKLMRNLNFGGESGSEPHTPTAQASGVLGAMDGYYSPEFRGDFGAGLLDLHAMDDTELLSEHVISEPFEPSPFIPSGTRAFEDEFNIASSRQQRSQADEDAVAMLPVIEKENVARENNVAKIKVVVRKRPLNKKELARKEDDIVSVCDNASLTVHEPKLKVPLLLSHDFYVDLTAYVEKHEFCFDAVLDEYVTNDEVYRVTVQPIIPIIFERTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSFFEIYGGKLFDLLSDRKDRKCHSSIVRLYYVYHKSWASRKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAVKKHPEVKESRRNNDGNELKSGKLVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNAKKDPAVSSSVSISRDVSSAPSIPIPTEAEDMNMLRQEVKLGELSRRVAEKESLSSSNFDMPTTALPSSNSFHAREEKSGGITGTSASFDKEPPEMRNAHSDPTGRKIPMYSHNLNDTEEKVQKVSPPRRKSTRDEKSEKLGSWQKKDNAVPDVSTASSKQYGPGISNANDAGSRKSEPEPTSDGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSHIENYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR 843
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22315197 22323063 - Lsi09G014310.1 Lsi09g01431 671044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01431 843 SMART kinesin_4 196 570 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g01431 843 MobiDBLite consensus disorder prediction 718 753 - -
Lsi09g01431 843 CDD KISc_KIF2_like 198 562 - -
Lsi09g01431 843 MobiDBLite consensus disorder prediction 570 590 - -
Lsi09g01431 843 Coils Coil 816 836 - -
Lsi09g01431 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 564 IPR027417 -
Lsi09g01431 843 MobiDBLite consensus disorder prediction 621 655 - -
Lsi09g01431 843 PRINTS Kinesin heavy chain signature 289 310 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g01431 843 PRINTS Kinesin heavy chain signature 514 535 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g01431 843 PRINTS Kinesin heavy chain signature 464 482 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g01431 843 PRINTS Kinesin heavy chain signature 421 438 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g01431 843 PANTHER KINESIN-LIKE PROTEIN 1 842 - -
Lsi09g01431 843 MobiDBLite consensus disorder prediction 564 594 - -
Lsi09g01431 843 PANTHER KINESIN-RELATED PROTEIN 6 1 842 - -
Lsi09g01431 843 MobiDBLite consensus disorder prediction 621 755 - -
Lsi09g01431 843 ProSiteProfiles Kinesin motor domain profile. 198 564 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g01431 843 Pfam Kinesin motor domain 204 563 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi09g01431 843 ProSitePatterns Kinesin motor domain signature. 463 474 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi09g01431 843 Gene3D Kinesin motor domain 177 567 IPR036961 -
Lsi09g01431 843 Coils Coil 760 791 - -
Lsi09g01431 843 MobiDBLite consensus disorder prediction 682 715 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01431 K10393 KIF2_24, MCAK; kinesin family member 2/24 - csv:101210544 1484.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00880 Lsi-Chr6:18345241 Lsi09g01431 Lsi-Chr9:22315197 1.74E-23 dispersed
Lsi09g01431 Lsi-Chr9:22315197 Lsi06g01359 Lsi-Chr6:24161449 3.04E-47 dispersed
Lsi09g01431 Lsi-Chr9:22315197 Lsi02g02793 Lsi-Chr2:34155761 1.64E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g296 . . . Bda08g00291 . . . . Cmo08g01203 Cmo17g00316 . . . . . . . . . . . . . . Cla06g00478 Cam06g0512 Cec06g0513 Cco06g0516 Clacu06g0496 Cmu06g0498 Cre06g1269 Cone14ag0761 Cone15ag0770 . . . . Chy11g01510 . . . . . Bpe05g00836 . . . Sed02g1073 . . Cma08g01228 Cma17g00327 Car08g01104 Car17g00301 Cpe12g00278 Cpe17g00027 Bhi12g02054 Tan06g2680 Cmetu07g0697 . . . . . . . . . . . Lsi09g01431 . . Cme11g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007921 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36