Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01434 ATGCGAGTTTACAATCTGACTAACTCTGTATTGAACAGCTACCTTACGAAAATCACAAAGTGCCTTCGCGACCCTTGTGAACTCGTCAGAAGACATACGTTCATACTTCTATCGAGATTACTACAGAGGGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTTGACGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTTGGCAACATTTTAAAAGGTTATAAATTTTACATTATTGGCCATTGTCATGGTTGTAATATTGGTCACGTCGTTACAAACATGCCAATGGAATTGAAATGTAAAACTGAATTTGCAGTGAAGGCGCCACTTTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTTTGAATGACTGTCGTGCTCATTCTGGACATAGTAATTCAAATGCTTCGCGAGCTGAAAGTCGACTATTCTCCATCCGAGGCAATGATGAAAGGTCGAGGCTCAAGAGAATGCACATTTACGTTTCTCTGTTGAAACAAATGGCTCCCGAGCATCTTTTGGCAACCTTTGCAAAGTTATGTGCAGAGATTCTTGTTGCAGCATCAGATGGTATGCTGAATATAGATGATACCACTGCACGGTCTGTTTTACAGAATCTCATTAGTTCCCCTTGGCTGGAAGCACAGGATACCTTTGATATTCTTGCTTGTAAAGAGATCCGACAATCGGTAAATCGAGTATCATCATCATCAGAATCTGGTGATGTAGATGAGGAAGGAGGTGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGAACGAAATCGATGACTTATTGGTAGCCGATAAGCAACTTCAGAAAGAGCTTCTCTATGACATTCAAAAGTACGAATCTACCAAAGCCAAGTCAGCTGCTGCCGAGGCGGTCAACGAGATGCAAAAGTCAACTATCTATCTTTCGCCTGAGGCTCCTCCTCAAGCTAAAAGTGCCATTAACAAGCTAACCTCAAAGCTTCGAAATGACTTGAAAGTTGCTTCAGCCATTGCTGATGTAGCAGCTGCAGCCACAGCAAAATCTGTGCTTAGGGAAGTGAACAGAGGGGCTTCGACACCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAAGAATGGAATAAATACCTCGCATTTGAATGTGATTGAATCTTTGAGAAAACATCAAAACGACGGTGGCCTTAAGGGTAGAAGCTCAACTATTGTTTCTCCATCTGTATCTGTGGTCTTATCAACATCTGCAATTATGGAAAGGATTCCAAGCAAATGGCAACATCGGGTTTGGCATGCTCCATGGAGAAATTATAGGGTCATAAGTGGTCACTTTGGATGGGTAAGGTCTGTTCCATTTGATCCAAGTAACACATGGTTTTTTACTGGTTCAGCAGATCGTACAATCAAGGTGTGGGACATTCGAAGTAAGATGCAAATTCATGCCCCCGTTGGGCATGATAAGACAGTTTACTCATTTCTTACTCGACCAACGAAGACTATAATCAATGCAATGGCTATCAATGAGGAGAGTGTTATGATGAGGAAGGAGGCGAGAGCGGATGAGCATTTGCTGCTAGAGGAAAGGTCACCACCACTCATGCAGTGA 1638 42.49 MRVYNLTNSVLNSYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKGYKFYIIGHCHGCNIGHVVTNMPMELKCKTEFAVKAPLLAYNSFVEAIYVLNDCRAHSGHSNSNASRAESRLFSIRGNDERSRLKRMHIYVSLLKQMAPEHLLATFAKLCAEILVAASDGMLNIDDTTARSVLQNLISSPWLEAQDTFDILACKEIRQSVNRVSSSSESGDVDEEGGESGGASAARGKNEIDDLLVADKQLQKELLYDIQKYESTKAKSAAAEAVNEMQKSTIYLSPEAPPQAKSAINKLTSKLRNDLKVASAIADVAAAATAKSVLREVNRGASTPPLGSLSLPKLKSRTGGKNGINTSHLNVIESLRKHQNDGGLKGRSSTIVSPSVSVVLSTSAIMERIPSKWQHRVWHAPWRNYRVISGHFGWVRSVPFDPSNTWFFTGSADRTIKVWDIRSKMQIHAPVGHDKTVYSFLTRPTKTIINAMAINEESVMMRKEARADEHLLLEERSPPLMQ 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22344595 22349380 - Lsi09G014340.1 Lsi09g01434 671047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01434 545 Pfam WD domain, G-beta repeat 446 483 IPR001680 GO:0005515
Lsi09g01434 545 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 492 IPR001680 GO:0005515
Lsi09g01434 545 MobiDBLite consensus disorder prediction 243 265 - -
Lsi09g01434 545 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 12 268 - -
Lsi09g01434 545 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 451 486 - -
Lsi09g01434 545 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 268 398 - -
Lsi09g01434 545 Gene3D - 430 515 IPR015943 GO:0005515
Lsi09g01434 545 SMART WD40_4 444 483 IPR001680 GO:0005515
Lsi09g01434 545 PANTHER CONDENSIN 12 268 IPR026971 GO:0007076
Lsi09g01434 545 PANTHER CONDENSIN 268 398 IPR026971 GO:0007076
Lsi09g01434 545 SUPERFAMILY WD40 repeat-like 440 508 IPR036322 GO:0005515
Lsi09g01434 545 Pfam non-SMC mitotic condensation complex subunit 1 8 80 IPR032682 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01434 K11491 NCAPD3; condensin-2 complex subunit D3 - tcc:18603515 396.741
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01434 Lsi-Chr9:22344595 Lsi09g01439 Lsi-Chr9:22372093 2.52E-09 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029079 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2