Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01438 ATGAATTCTGAGCTGCTTCGAAGAAATCAACCGAATCCGACTCCACAAACTCAAAATCCGGTGATTTATTCACCAAGAACTCCGGCAGGTTCTTCCGGCAAATCCAGGAGTCCGATCCGTTACATGCTTCGCGAGCAACGTCTTCTATTTGTTTTTGTCGGTATCGCCATTGCAGCTCTGTTCTTCAATGTCGGCCGTTTCGCTTTTCCGTCGGAGCTCCGTGATGATCACCGCTATCAAGCGGCGTTGAATCCGTTTATTCAATTGGATTCGAAGATCCCGATGCGGAGAGTTTTGTATGAAACTCGCCGTGAAGGATCGCTAGGGCGGGTGAATTTGGCGGGGAAAGTCCCGCCGGGATTGAATAAGAGGAATCTGAGGATTGTTGTTACTGGTGGCGCTGGATTCGTCGGAAGCCATCTCGTAGACCGTTTGATTGAGAGAGGCGATAACGTGATCGTCGTTGATAATTTCTTCACTGGACGGAAGGAGAATCTGGTTCATCATTTCGGAAACCCGAGATTTGAACTGATTCGACACGACGTCGTTGAACCGCTTCTATTGGAAGTTGATCAGATCTACCACTTGGCTTGCCCTGCTTCTCCTGTTCATTATAAATTCAATCCCGTCAAGACAATCATATCCTTCTTGTTCTTCTTCCTCGATATTTTTGAAAATTTTAATTTCGGCTTGCGAAGAGAGTCGGCGCTCGATTTTTGCTCACCAGCACCAGTGAAGTCTACGGCGATCCGCTCCAACACCCGCAGGCGGAAACCTACTGGGGGAACGTCAATCCCATCGGTAACTCCCTGCCATGGCTGCCAATCCTCTGTTTTTCCATTTCCTCCATTTCCGTTACTGATTGTGTGCTTCTCGCCGCCGACTGGCCTTCTCTTCGCAGGTGTACGGAGCTGCTACGATGAAGGAAAGCGCACGGCGGAGACTTTGACAATGGATTACCACAGAGGCCTTGGCATTGAGGTGCGGATTGCTCGGATCTTCAATACTTATGGACCACGGATGTGCATCGATGACGGTCGAGTTGTGAGCAATTTTGTAGCACAGGCATTGAGAAAGGAGCCGTTGACAGTTTATGGGGATGGCAAGCAAACCCGGAGTTTTCAATACGTTTCTGATCTGCGCATCTTCGGCGACCCCAAAGACGACAGCTCCTCCACCGCTGCCGTGGCTGCCCTCCTCTCCACCACCAGCTCCTCGGTTTAG 1224 50.16 MNSELLRRNQPNPTPQTQNPVIYSPRTPAGSSGKSRSPIRYMLREQRLLFVFVGIAIAALFFNVGRFAFPSELRDDHRYQAALNPFIQLDSKIPMRRVLYETRREGSLGRVNLAGKVPPGLNKRNLRIVVTGGAGFVGSHLVDRLIERGDNVIVVDNFFTGRKENLVHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPVKTIISFLFFFLDIFENFNFGLRRESALDFCSPAPVKSTAIRSNTRRRKPTGGTSIPSVTPCHGCQSSVFPFPPFPLLIVCFSPPTGLLFAGVRSCYDEGKRTAETLTMDYHRGLGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLRIFGDPKDDSSSTAAVAALLSTTSSSV 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22361451 22367307 - Lsi09G014380.1 Lsi09g01438 671051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01438 407 MobiDBLite consensus disorder prediction 1 36 - -
Lsi09g01438 407 Pfam GDP-mannose 4,6 dehydratase 130 212 IPR016040 -
Lsi09g01438 407 Pfam GDP-mannose 4,6 dehydratase 303 380 IPR016040 -
Lsi09g01438 407 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 1 215 - -
Lsi09g01438 407 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 4 301 380 - -
Lsi09g01438 407 Gene3D - 122 224 - -
Lsi09g01438 407 Gene3D - 292 382 - -
Lsi09g01438 407 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 215 IPR044516 GO:0042732|GO:0048040|GO:0070403
Lsi09g01438 407 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 126 380 IPR036291 -
Lsi09g01438 407 MobiDBLite consensus disorder prediction 1 34 - -
Lsi09g01438 407 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 301 380 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01438 K08678 UXS1, uxs; UDP-glucuronate decarboxylase [EC:4.1.1.35] - csv:101222435 485.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01075 Lsi-Chr3:20580663 Lsi09g01438 Lsi-Chr9:22361451 6.67E-78 dispersed
Lsi04g00884 Lsi-Chr4:8749014 Lsi09g01438 Lsi-Chr9:22361451 9.09E-21 dispersed
Lsi09g01438 Lsi-Chr9:22361451 Lsi07g00287 Lsi-Chr7:3087610 8.92E-10 dispersed
Lsi09g01438 Lsi-Chr9:22361451 Lsi03g02080 Lsi-Chr3:32097508 1.13E-94 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120