Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01456 ATGGGATCGGAGCAGTTGATGTCCGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTACGGCTTCGATGTCTTCGTTTTTTTCATTCCATCAGGATGCTCCTGAGCCGACGAGGATTTTTGATGAGTTACCGAAGGCCACAATCATTTCCGTTTCTCGTCCTGATGCCGGCGATATTAGTCCCATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGTTGAAGAAAGCGTCCCATGTATTTTATTTGCATTTCGCACTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCAAACAACAGTGCCCCAAGATGAGGATGGACCAGATGATGAGACCGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTAGGAAGGCAGCACTCTATGTCTGATAGAGCTAAGACTGCAATGCAAGGGTATCTGAATCACTTTTTGAGTAACATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATACGGCCCAAAGTTGAAAGAGGATTATGTCATGGTGAAGCATCTTCCTAAAATTCCAAAGGAAGATGACTCTAGGAAATGTTGTCTATGCCCATGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGGTTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATCGTTTTTGATGTGCTACCTACTTCTGATGGCAATGGAGATGGACGAGTATCTCTGGCTAAGGAAATTAAGGAGCCAAATCCATTACGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATTAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGTTCTTATGCTCCACCCAGAGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTCATCGATGGCCTAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGCGGCGTCCTTTTGTTTCAAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAGAAAACTTCTCGGCATCCATGAGAATGTGAGAGTATTGCGCTACCCAGACCACTTCTCCAGTGGCGTGTATTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACGCCCGAACATAAAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAAAGATGAGTTGGATCGCAATAAATATCCTCGCATGCCCTGGCATGATGTCCACTGTGCACTCTGGGGACCACCTTGTCGAGACGTAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAATGAGCAAGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAACCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACAATTCTAGAGGAACAACAGTGCAGGATTCGTTTTCTCGAGGATCATCTTTCCACGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGATGCTGAAAATGAAGGTCCAAAATTAAATGGACTGGAGTCCATTGTCAATCCCCTTGATCAGCCAAGTAAGGTCAGCAGCGGTCTCTCTTTTTCTTTCAAGAAGATCAAAGTTGAACCCATAGGACCTGATATGCCTCTGAAAGGCTTTGTTGATGATCTTGACCATTTGGATCCCCATGGAAAGTTGTCTGGAGATGGGAAAACACATCTTCGTGTCAAAAGTTCAGATTTTGAGTGGTGGGAAACACAAGACAGAGGACATCATGGTGGCTTCACAGATGAATCTGGACAAGTTGGTCCATGCGCTTCATGTCGTTGCCAGGTCATCAGAAGCGTCAGTCAGTGGTCTGCTGGGACAAGCCAAACTGAAGAAAGCATTCACATTGCATATTGCTCTCTTATTGAGAAAGCAGAACATTTTATCTACATTGAGAATCAATTTTTTATATCAGGCCTCTCAGGAGACGATTCAATACGGAACCGTGTGTTAGAAGCATTATATCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGATTTTTAGGGTCATTATTGTCATACCACTCTTACCTGGATTTCAGGGGGGTCTGGATGACAGTGGTGCAGCATCAGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAGAATTCAATATGGCATAATCTTTATGATCTTCTTGGTTCAAAAGTTCATGATTACATATCATTTTACGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTATGTGCATAGTAAGATTATGATTGTCGATGATTGTATTGCTTTGATTGGATCGGCTAATATCAACGACAGAAGTTTACTCGGTAATAGGGATTCAGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCACATATGGGAGGACAACCATGGAAAGCAGGAAAATTTTGCTGGAGTCTACGTCTCTCTCTTTGGTCCGAACATCTCGGTCTTCGTCCCGGACAGATCAATCAAATAGTTGACCCAATTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGACAAACACAACAATATACCAAGATGTTTTTTCTTGCATACCAAACGACCTCATAAATTCCAGAGCTGGACTGAGACAGAGCGTTAGGATCTGGAAAGAGCGACTGGGACACACGACAATAGATTTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATTGAAAGGATTGATCCAATGGAAAGATTAAGTTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTGGAATTCCTGAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTACTATGCATCTCTAGTTTTTCATTAA 3342 42.64 MGSEQLMSGGGPRYVQMQSEPPTASMSSFFSFHQDAPEPTRIFDELPKATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTTVPQDEDGPDDETDPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKTAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDSRKCCLCPWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRVSLAKEIKEPNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMKDELDRNKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNNRELEVEKKSFDNSRGTTVQDSFSRGSSFHDIPLLLPQEADGQDAENEGPKLNGLESIVNPLDQPSKVSSGLSFSFKKIKVEPIGPDMPLKGFVDDLDHLDPHGKLSGDGKTHLRVKSSDFEWWETQDRGHHGGFTDESGQVGPCASCRCQVIRSVSQWSAGTSQTEESIHIAYCSLIEKAEHFIYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKIFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSIWHNLYDLLGSKVHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIVDDCIALIGSANINDRSLLGNRDSEIAIVIEDNELINSHMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPIADSTYKDTWMATAKTNTTIYQDVFSCIPNDLINSRAGLRQSVRIWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASLVFH 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22538285 22550555 + Lsi09G014560.1 Lsi09g01456 671069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01456 1113 Gene3D Endonuclease Chain A 365 603 - -
Lsi09g01456 1113 SMART PH_update 216 344 IPR001849 -
Lsi09g01456 1113 MobiDBLite consensus disorder prediction 1 20 - -
Lsi09g01456 1113 Coils Coil 98 118 - -
Lsi09g01456 1113 CDD PLDc_vPLD1_2_yPLD_like_2 770 954 - -
Lsi09g01456 1113 Gene3D - 243 340 IPR011993 -
Lsi09g01456 1113 Pfam PLD-like domain 783 956 IPR025202 -
Lsi09g01456 1113 SUPERFAMILY PH domain-like 248 340 - -
Lsi09g01456 1113 PIRSF PLD_euk 697 1113 IPR016555 GO:0004630|GO:0006654|GO:0048017
Lsi09g01456 1113 PIRSF PLD_euk 34 628 IPR016555 GO:0004630|GO:0006654|GO:0048017
Lsi09g01456 1113 PANTHER PHOSPHOLIPASE 29 1110 - -
Lsi09g01456 1113 CDD PH_PLD 193 340 - -
Lsi09g01456 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 910 937 IPR001736 GO:0003824
Lsi09g01456 1113 SUPERFAMILY Phospholipase D/nuclease 322 596 - -
Lsi09g01456 1113 PANTHER PHOSPHOLIPASE D 29 1110 IPR015679 -
Lsi09g01456 1113 MobiDBLite consensus disorder prediction 122 153 - -
Lsi09g01456 1113 SUPERFAMILY Phospholipase D/nuclease 750 955 - -
Lsi09g01456 1113 Pfam Phospholipase D Active site motif 477 504 IPR001736 GO:0003824
Lsi09g01456 1113 Gene3D Endonuclease Chain A 736 966 - -
Lsi09g01456 1113 CDD PLDc_vPLD1_2_yPLD_like_1 370 515 - -
Lsi09g01456 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 477 504 IPR001736 GO:0003824
Lsi09g01456 1113 SMART pld_4 910 937 IPR001736 GO:0003824
Lsi09g01456 1113 SMART pld_4 477 504 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01456 Lsi-Chr9:22538285 Lsi09g01919 Lsi-Chr9:28031240 2.60E-16 dispersed
Lsi09g00725 Lsi-Chr9:8355604 Lsi09g01456 Lsi-Chr9:22538285 1.71E-63 transposed
Lsi11g00608 Lsi-Chr11:6426637 Lsi09g01456 Lsi-Chr9:22538285 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01456 K01115 - csv:101211856 2210.26