Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01457 ATGGAATCAACGAACGGAAGGCTTCAAGTTTCCGAGTACAAATTTGCTCTCGCCGGAAATTTTCGGATTCCGGCCGGCGGCGATCACTTTCAGGAGGTTGTTTCAGATCAGTTCCGGCATATAGAACTTACCGTAGAGCGTATTTTGATCATGGTGCTTTTTCCGGAAGTTATTGAGGAAATGGTAAGAAATATGGCGATAAAGAAAAAGAATAATGAAGATGGCGTCAAAGAAAGGGCTCAAGAAATAATGGCTAAGGAGGGAAAAAGGAACAAAGCCATGATTTGTTTATCTGGAAGTGCTAAAACCAGCAAGTTTGATGATATGGCTTATGTTTGCTCCAAGAGAGGAAATAAAGGAATTAATCAGGATTCTCTTGTTGTTTGGGAGGATTATGGTAGCCAAGGAGATGTAGTTTTATGTGGAATGTTCGATGGACATGGGCCTTGGGGCCACATGATTAGCAAACAAGTCAGAAAGTCATTACCTTCTCAATTATTCACCAATTTGCAACAAAATCTTTCCATGCAAACCGATCAAAACCATCTATTTCCTTTCAACTTATGGAAACAATCTTGCTTAAAAACTTATGCCGCCATTGATGAGGAACTCAAGCAACACCCTCGCATTGATTCGTTTTACAGTGGCACCACTGCTTTAACCGTCGGGCGACATCTTGTTGTTGCGAATGCTGGCGATTCACGAGCTGTGTTGGCAGTAACTTCTGATGATGGCTGCTTGAAACCAGTTCAACTCTCCGTTGATTTCAGACCTAATTTGCCTGATGAACCTGGAGTTTACAGAGTGTGGACTCCCAACTCTGGGACTCCAGGTTTGGCAATTTCCAGAGCTTTTGGCGATTACTGCACCAAACAGTATGGTCTCATTTCTGTGCCTGATGTATGGGACGTCATGTCGAATCAAGAAGCAGTTCACATAGTTTCTTCAACACCAAATAGGGAAATGTCGGCTAAACGACTAGTGGACTGTGCTGCACGTGCATGGAAATCAAGGAAACGAGGGTTTGCAAGGGACGACATGTCGGCCATTTGCCTCTTTTTTCATGCTTCACCCACAGAAAATGATTGA 1089 43.16 MESTNGRLQVSEYKFALAGNFRIPAGGDHFQEVVSDQFRHIELTVERILIMVLFPEVIEEMVRNMAIKKKNNEDGVKERAQEIMAKEGKRNKAMICLSGSAKTSKFDDMAYVCSKRGNKGINQDSLVVWEDYGSQGDVVLCGMFDGHGPWGHMISKQVRKSLPSQLFTNLQQNLSMQTDQNHLFPFNLWKQSCLKTYAAIDEELKQHPRIDSFYSGTTALTVGRHLVVANAGDSRAVLAVTSDDGCLKPVQLSVDFRPNLPDEPGVYRVWTPNSGTPGLAISRAFGDYCTKQYGLISVPDVWDVMSNQEAVHIVSSTPNREMSAKRLVDCAARAWKSRKRGFARDDMSAICLFFHASPTEND 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22554869 22562127 + Lsi09G014570.1 Lsi09g01457 671070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01457 362 PANTHER PROTEIN PHOSPHATASE 2C 41-RELATED 51 361 - -
Lsi09g01457 362 CDD PP2Cc 109 354 IPR001932 -
Lsi09g01457 362 Pfam Protein phosphatase 2C 134 300 IPR001932 -
Lsi09g01457 362 SUPERFAMILY PP2C-like 109 355 IPR036457 -
Lsi09g01457 362 SMART PP2C_4 97 352 IPR001932 -
Lsi09g01457 362 PANTHER ALPHABET, ISOFORM E-RELATED 51 361 - -
Lsi09g01457 362 Gene3D - 96 356 IPR036457 -
Lsi09g01457 362 ProSiteProfiles PPM-type phosphatase domain profile. 109 354 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01457 Lsi-Chr9:22554869 Lsi11g00963 Lsi-Chr11:15029915 2.52E-76 dispersed
Lsi11g00609 Lsi-Chr11:6480557 Lsi09g01457 Lsi-Chr9:22554869 1.10E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01457 - - csv:101214034 547.74