Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01461 ATGGGGTTCTCAAATATCAGAGATCTATTGACATCTTTTAGTCCGGATTTGCACTTCTTTGCCATCAGCTCCGGAGATGGTCGAGTTAAGATTTGGGACACGTTGAAGGGGCAGATACAGACTGAGTTTGCAGACATCTTTACATCTGATTCAACAAGCATACTCACAAAACCAGAAAAAGGGCATCTATCAATTGATTATAAATGCATGAAGTGGTTATCATTGGAGAAAAAGAGAAAAAGAAAGCGCCAATGTTTGTTGTTGTTGTTAGGAACCGGTAGTGGTGATGTTTTGGCTCTTGATGTAGCGGCTGGTGAATTGAAATGGAAATTAAGTGACTGTCATCCTGGGGGTGTTGCATCAATTTCCTTTCCTACAAATGGTTCATGCATATATACTGCTGGTGCTGATGGAATGCTATGCGAAATTGATTCTTTGTCGGGAAACCTGTTGAGGAAGTTCAAGGCTTCTACAAAGGCAATATCCTGTATTTCAGTTTCACCAGATGGGAAGATAATAGCAACTGCAGCTTCACAAATGAAGATCTTCAATTGCTCCAATCACAAAAAGATACAGAAGTTTTCTGGGCATCCTGGAGCTGTCCGATGTATGGTTTTTACCGAAGATGGAAGGTACATCCTTTCATCTGCAGTCGGTGAAAGGTATATTGTTGTTTGGGGTTTAGATGGAGGGAAAAAACAATCAGCTAGTTGTGTTCTTGCAATGGAGCATCCTGCCATCTTTGTGGACAGCAGGCGCTCAAATGATGGAGGTGATGAAACTGCTCTATACATTTTGGCCATATCAGAAATTGGTGTTTGTTATTTATGGTATGGACAGAATCTTGGGGAGTTACGAAGTGCCAAGCCTACTAAAATATTGATATCTGATAACGATATTTCCTCAAAGAGTAAAAAACGGGCGATACCTGCAATTTATGCTGCAAAGTTACAAGGAGTTCCTATGTCTGGGTCAGGACAGGTGTTCCTTGCTCATGGATTGCTAGTGAAGCCTTCATTTCAGAACGTCGTGGTGCAATCCGGCACCGACTTAAATCTAAACAGCTCCAATGAAGGAATTCTTCTACCAAGTCAGTCGATTGGAAAATCTAAGAAGGGTATAGATGTACAGGGTGGAGTCGTTGCATTAGACCGAGCTAATGCTGAAGATGCCTTACGGCCAATTTCGAAGGTTTTCGATTCTCAAAAGAAAAGTGCCTTATATCAAGATTTGCAAGTTGACCGCAATGATGTTTTGACTCAATTGGTTGACAGTGGGAACCAAGTAGAAGATGATGTCGGAGTGGAGGACACCGCATCAGTTTGCATGGAGGACCAACTCCGATCATTAGGCATACTCCACAGTACAGATGATCATACATCGGAGCCCATTCTTAAGTTAGCGATATCCAAGGGCATTGATCTCGAAACTAACATATCACAGAAAAAGTTAAGAGAAGCAGTTTTATCATTAGCACCAGGTGATGCATTCAAGCTACTTGGAAACTTAGTTAGCATCTGGCAATCTAGTCAACATATCTTGTCTCAAGAACAATCAACCCAGATGCTCGATTCTTTATTTAAGATTACTAAATCCAAAGAGACTGCGGTTCAACCTCTTCTTCAATTATCAGGTCGTTTGCAATTGGTGTTGGCACAAATTGAAAGGGCGTCAGCCAACAAAACCGATCAAACGTTACAACACGGTCTTGAAGTAGATGGAAGTGAGAGCATCGATGACGAAGACGAAGATGAAGACGAAGACGATGAAGTTGATGATGTTCTTTATGGGGAAGAAGAAAATGAATCTGAATTAAGTAGTGATGATGAGAATTAG 1836 41.23 MGFSNIRDLLTSFSPDLHFFAISSGDGRVKIWDTLKGQIQTEFADIFTSDSTSILTKPEKGHLSIDYKCMKWLSLEKKRKRKRQCLLLLLGTGSGDVLALDVAAGELKWKLSDCHPGGVASISFPTNGSCIYTAGADGMLCEIDSLSGNLLRKFKASTKAISCISVSPDGKIIATAASQMKIFNCSNHKKIQKFSGHPGAVRCMVFTEDGRYILSSAVGERYIVVWGLDGGKKQSASCVLAMEHPAIFVDSRRSNDGGDETALYILAISEIGVCYLWYGQNLGELRSAKPTKILISDNDISSKSKKRAIPAIYAAKLQGVPMSGSGQVFLAHGLLVKPSFQNVVVQSGTDLNLNSSNEGILLPSQSIGKSKKGIDVQGGVVALDRANAEDALRPISKVFDSQKKSALYQDLQVDRNDVLTQLVDSGNQVEDDVGVEDTASVCMEDQLRSLGILHSTDDHTSEPILKLAISKGIDLETNISQKKLREAVLSLAPGDAFKLLGNLVSIWQSSQHILSQEQSTQMLDSLFKITKSKETAVQPLLQLSGRLQLVLAQIERASANKTDQTLQHGLEVDGSESIDDEDEDEDEDDEVDDVLYGEEENESELSSDDEN 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22598316 22604776 + Lsi09G014610.1 Lsi09g01461 671074

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01461 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 236 IPR001680 GO:0005515
Lsi09g01461 611 PANTHER OS03G0300300 PROTEIN 1 611 - -
Lsi09g01461 611 Pfam WD domain, G-beta repeat 190 226 IPR001680 GO:0005515
Lsi09g01461 611 Pfam WD domain, G-beta repeat 148 177 IPR001680 GO:0005515
Lsi09g01461 611 Pfam WD domain, G-beta repeat 6 33 IPR001680 GO:0005515
Lsi09g01461 611 SMART WD40_4 187 227 IPR001680 GO:0005515
Lsi09g01461 611 SMART WD40_4 147 184 IPR001680 GO:0005515
Lsi09g01461 611 SMART WD40_4 104 144 IPR001680 GO:0005515
Lsi09g01461 611 SMART WD40_4 2 33 IPR001680 GO:0005515
Lsi09g01461 611 PANTHER OS03G0300300 PROTEIN 1 611 - -
Lsi09g01461 611 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 232 IPR011047 -
Lsi09g01461 611 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 42 IPR001680 GO:0005515
Lsi09g01461 611 MobiDBLite consensus disorder prediction 562 611 - -
Lsi09g01461 611 MobiDBLite consensus disorder prediction 575 611 - -
Lsi09g01461 611 Gene3D - 4 143 IPR015943 GO:0005515
Lsi09g01461 611 Gene3D - 144 277 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01461 K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5 - csv:101213788 1016.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02732 Lsi-Chr2:33623000 Lsi09g01461 Lsi-Chr9:22598316 1.02E-49 dispersed
Lsi09g01461 Lsi-Chr9:22598316 Lsi01g01291 Lsi-Chr1:11177232 3.07E-07 dispersed
Lsi09g01461 Lsi-Chr9:22598316 Lsi02g02285 Lsi-Chr2:29422484 1.96E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g131 . . . . . . . . Cmo08g01221 . . . . . . . . . . . . . . . Cla06g00453 Cam06g0483 Cec06g0487 Cco06g0486 Clacu06g0470 Cmu06g0470 Cre06g1244 . . . . . Csa06g01770 Chy11g01541 . . . . . . . . . . . . Cma08g01250 . Car08g01123 . . Cpe17g00044 Bhi12g02020 . . . Hepe03g0074 . . . . . . . . . Lsi09g01461 . . Cme11g02049
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007402 1 2 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 34