Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01464 ATGATTGGCTGTGATATAGCAATGGGTGTTTTCACTTACGAAAACGAAGTGGCCTCCGTTATTCCTCCGGCTAAATTCTTTAAGGCATTCATTCTTGACGCTGACCAACTTTACCCTAAGATTGTGCCAAATCAGCCCCAAACTGAAATTGTCGAAGGAGATGGTGGCGCTGGAACTATCAAGAAGATCACCTTCAACCACGGAGGACAAGTGAAAACTATTGTACATAGGTTGGATGTAGTGGATGAAGCATCGTTGACATACAAATACACAGTGTTAGAAGGAGATCTTATATCAGATACTATAGACCAAATTGTAAAGGAAATAAAGGTAACGGCAGGTTCTGACGGAGGATCCATTTTGAAGAGCACAAGTGTTTACCACACTAAAGGAGACAGCCAACTCGACGAAGAGAAGCTGAAGATCGGCGAGGAAAAGGGACTGGCCCTTTTCAAAGCTGCTGAGAGCTACCTCTTGGCCAACCCTGGCGAATACAACTAA 501 43.91 MIGCDIAMGVFTYENEVASVIPPAKFFKAFILDADQLYPKIVPNQPQTEIVEGDGGAGTIKKITFNHGGQVKTIVHRLDVVDEASLTYKYTVLEGDLISDTIDQIVKEIKVTAGSDGGSILKSTSVYHTKGDSQLDEEKLKIGEEKGLALFKAAESYLLANPGEYN 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22616247 22622036 + Lsi09G014640.1 Lsi09g01464 671077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01464 166 CDD Bet_v1-like 11 158 - -
Lsi09g01464 166 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 8 165 - -
Lsi09g01464 166 SUPERFAMILY Bet v1-like 9 163 - -
Lsi09g01464 166 PRINTS Major pollen allergen Bet V1 signature 56 65 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi09g01464 166 PRINTS Major pollen allergen Bet V1 signature 91 104 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi09g01464 166 PRINTS Major pollen allergen Bet V1 signature 72 91 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi09g01464 166 PRINTS Major pollen allergen Bet V1 signature 10 30 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi09g01464 166 PRINTS Major pollen allergen Bet V1 signature 33 43 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi09g01464 166 PRINTS Major pollen allergen Bet V1 signature 116 132 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi09g01464 166 PRINTS Major pollen allergen Bet V1 signature 150 160 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi09g01464 166 SMART Bet_v_1_2 8 161 IPR000916 GO:0006952
Lsi09g01464 166 Gene3D - 9 164 IPR023393 -
Lsi09g01464 166 PANTHER - 8 165 - -
Lsi09g01464 166 Pfam Pathogenesis-related protein Bet v 1 family 8 161 IPR000916 GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01464 - - - csv:101214193 276.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01462 Lsi-Chr9:22608043 Lsi09g01464 Lsi-Chr9:22616247 1.37E-109 dispersed
Lsi09g01464 Lsi-Chr9:22616247 Lsi04g00523 Lsi-Chr4:4832410 3.07E-08 dispersed
Lsi09g01463 Lsi-Chr9:22611219 Lsi09g01464 Lsi-Chr9:22616247 4.02E-115 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01464 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000275 21 4 4 20 7 3 2 3 3 2 2 3 2 2 2 2 3 9 2 3 2 5 3 3 4 3 5 1 5 15 145