Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01466 CTCTCTTTTTTCTTGTGGGTATTTGAGCCTTGTGGAATGGATCTGAGCCATATGAAGGGATCGATCCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCCGATCAGTTCCCGGCGGGTCTTCGCGTTCTGGTTGTAGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGAGCGGAGATTGCATTATCCATGCTTCGTGAGAACAAAAATGGTTTTGATATTGTTTTAAGCGATGTACATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGTTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCTGTTCGGATAGAAGCACTTAGGAACATATGGCAACATGTAGTTCGAAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACATTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAGCAGTTTGTTGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCAGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGTTTATATCTTAGAAGGCTTAGTGGAGTATCTCCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCATCTTTTGGGCCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTCTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCATCGGGACTTCGTAGGCCTACAGCGAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGCTTTGAAAATCCTAAACTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAATAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGTGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACACCAAACTGTAGGACAAACTCTAAGTAACTCTCCTGCTAGCCACTTAAGGAAGCCGATCGTATCAGGTAACGTTACGATGGGAAATGGGACTGCTCATAATAGCCACAGACCTGGATACAATCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCAAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAATGTAAGCACCTTGGCCTTTGGTACTTCTCATCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACGAATGGACAAAATCAACATTCATCCGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCCGAGAATCCACAATGTATCGCTCAAAACTCGCTTCTCGATCCCATGGAGGTCAAAACTCAGAGAATCCCTGATGCAAGCTATCAAACTGACCTCATATCTGAGGACTTTGGCCAAGATGAACTTCTTGGTGTCTTTCTCAAACAACAGCTATGTTTTCCGTTTCCCAGCAACAAGGAGACAATGGATCGGTCGAATTTACCGGGTACCAAACGGAAAATATATGCGTTTAGAACATCTCTTGCTTTAGTTCCCCATTTGGTTGCAGCTTCAAATACACTTTGTTGTAACTTTAAAGATCAAAGTCTTCCCACATTAGATGACAGATTAGATGACAGAGGCAGTTCATCATTCTTGTCAACTAGTCCATTGTGA 2190 43.06 LSFFLWVFEPCGMDLSHMKGSIPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPSFGPMASFNGIDLQTLSVTGQLSPQSLAALQASGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTMGNGTAHNSHRPGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMSSYDVFSDLHLQKSHDWDSQNVSTLAFGTSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQHSSVIGKTIFSFSDSTQPENPQCIAQNSLLDPMEVKTQRIPDASYQTDLISEDFGQDELLGVFLKQQLCFPFPSNKETMDRSNLPGTKRKIYAFRTSLALVPHLVAASNTLCCNFKDQSLPTLDDRLDDRGSSSFLSTSPL 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22652653 22656596 + Lsi09G014660.1 Lsi09g01466 671079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01466 729 CDD REC_typeB_ARR-like 47 161 - -
Lsi09g01466 729 Pfam Myb-like DNA-binding domain 227 277 IPR001005 -
Lsi09g01466 729 ProSiteProfiles Response regulatory domain profile. 46 161 IPR001789 GO:0000160
Lsi09g01466 729 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 650 - -
Lsi09g01466 729 Pfam Response regulator receiver domain 47 155 IPR001789 GO:0000160
Lsi09g01466 729 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 650 IPR045279 GO:0009736
Lsi09g01466 729 Gene3D - 222 284 - -
Lsi09g01466 729 PIRSF RR_ARR_type-B 27 650 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi09g01466 729 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 281 IPR017930 -
Lsi09g01466 729 SMART REC_2 45 157 IPR001789 GO:0000160
Lsi09g01466 729 MobiDBLite consensus disorder prediction 168 185 - -
Lsi09g01466 729 MobiDBLite consensus disorder prediction 168 222 - -
Lsi09g01466 729 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
Lsi09g01466 729 MobiDBLite consensus disorder prediction 202 222 - -
Lsi09g01466 729 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 225 278 IPR006447 GO:0003677
Lsi09g01466 729 MobiDBLite consensus disorder prediction 186 201 - -
Lsi09g01466 729 SUPERFAMILY CheY-like 44 168 IPR011006 -
Lsi09g01466 729 Gene3D - 45 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01466 - - K14491 csv:101210138 1184.09
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01039 Lsi-Chr6:20575480 Lsi09g01466 Lsi-Chr9:22652653 1.48E-76 dispersed
Lsi06g01134 Lsi-Chr6:21595171 Lsi09g01466 Lsi-Chr9:22652653 3.53E-58 dispersed
Lsi08g01621 Lsi-Chr8:24136876 Lsi09g01466 Lsi-Chr9:22652653 1.42E-95 dispersed
Lsi09g01466 Lsi-Chr9:22652653 Lsi11g00368 Lsi-Chr11:3798647 4.74E-91 dispersed
Lsi02g02442 Lsi-Chr2:30976882 Lsi09g01466 Lsi-Chr9:22652653 5.07E-10 wgd
Lsi05g01569 Lsi-Chr5:23459437 Lsi09g01466 Lsi-Chr9:22652653 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g113 Blo01g00060 . Bda03g01158 Bda08g00304 Bpe04g01103 . Bma04g01144 Bma05g01022 Cmo08g01225 Cmo17g00339 Cma06g01548 . Car06g01314 Car14g01419 Sed02g1152 Cpe08g00165 Cpe03g01344 Bhi01g01057 Tan10g1051 Cmetu11g1360 Lac11g0905 Hepe05g1404 . Lcy11g1369 Cla06g00448 Cam06g0476 Cec06g0481 Cco06g0479 Clacu06g0463 Cmu06g0463 Cre06g1238 Cone14ag0738 Cone15ag0748 Cone7ag0120 Cone4ag0123 . Csa06g01765 Chy11g01546 . . Blo07g00160 . . Bpe05g00823 Bpe13g00682 . Bma06g01483 . . Cmo14g01636 Cma08g01254 Cma17g00351 Car08g01126 Car17g00322 Cpe12g00300 Cpe17g00047 Bhi12g01899 . . . . . Lcy12g0777 Cla05g00679 Cam05g0746 Cec05g0752 Cco05g0752 Clacu05g0738 Cmu05g0703 Cre05g0777 Lsi09g01466 Csa03g01497 Chy06g00735 Cme11g02055
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 1 189 Response Regulator Gene Family AT1G59940 61.7 7.8e-56 214.5
Lsi06g01513 . 8 179 Response Regulator Gene Family AT1G59940 60.5 1.0e-47 187.6
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G59940 57.1 4.6e-40 162.2
Lsi09g00795 . 5 152 Response Regulator Gene Family AT1G59940 58.1 6.0e-40 161.8
Lsi04g01015 . 18 150 Response Regulator Gene Family AT1G59940 61.7 3.3e-38 156.0
Lsi04g00507 . 16 185 Response Regulator Gene Family AT1G10470 66.5 3.3e-54 208.8
Lsi06g01513 . 25 172 Response Regulator Gene Family AT1G10470 64.9 7.3e-46 181.0
Lsi03g01597 CCT 10 154 Response Regulator Gene Family AT1G10470 57.9 6.0e-40 161.4
Lsi09g00795 . 11 157 Response Regulator Gene Family AT1G10470 59.2 2.3e-39 159.5
Lsi04g01015 . 20 150 Response Regulator Gene Family AT1G10470 61.1 1.6e-37 153.3
Lsi06g01513 . 21 188 Response Regulator Gene Family AT3G48100 68.2 1.4e-54 209.5
Lsi04g00507 . 29 162 Response Regulator Gene Family AT3G48100 73.1 1.9e-51 199.1
Lsi09g00795 . 11 151 Response Regulator Gene Family AT3G48100 58.9 7.7e-40 160.6
Lsi03g01597 CCT 3 156 Response Regulator Gene Family AT3G48100 53.9 1.0e-39 160.2
Lsi04g00507 . 11 175 Response Regulator Gene Family AT5G62920 64.2 3.7e-50 194.9
Lsi06g01513 . 22 168 Response Regulator Gene Family AT5G62920 71.4 1.1e-49 193.4
Lsi09g00795 . 11 151 Response Regulator Gene Family AT5G62920 58.9 5.9e-40 161.0
Lsi03g01597 CCT 10 156 Response Regulator Gene Family AT5G62920 55.1 2.3e-39 159.1
Lsi06g01513 . 30 167 Response Regulator Gene Family AT1G19050 73.9 2.4e-50 195.7
Lsi04g00507 . 28 185 Response Regulator Gene Family AT1G19050 59.7 8.9e-45 177.2
Lsi03g01597 CCT 8 159 Response Regulator Gene Family AT1G19050 52.6 2.1e-38 156.0
Lsi09g00795 . 3 154 Response Regulator Gene Family AT1G19050 53.3 4.7e-38 154.8
Lsi04g01015 . 20 151 Response Regulator Gene Family AT1G19050 60.6 2.3e-37 152.5
Lsi03g01597 CCT 1 160 Response Regulator Gene Family AT2G41310 72.5 2.0e-58 222.6
Lsi09g00795 . 1 153 Response Regulator Gene Family AT2G41310 64.9 2.9e-49 192.2
Lsi04g00507 . 25 158 Response Regulator Gene Family AT2G41310 58.9 3.4e-42 168.7
Lsi06g01513 . 30 164 Response Regulator Gene Family AT2G41310 61.7 2.9e-41 165.6
Lsi04g01015 . 20 151 Response Regulator Gene Family AT2G41310 55.9 1.2e-39 160.2
Lsi03g01597 CCT 1 158 Response Regulator Gene Family AT3G57040 77.8 4.5e-61 231.5
Lsi09g00795 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.6e-50 196.4
Lsi04g00507 . 25 158 Response Regulator Gene Family AT3G57040 60.1 5.0e-44 174.9
Lsi06g01513 . 29 164 Response Regulator Gene Family AT3G57040 61.1 1.8e-41 166.4
Lsi04g01015 . 18 151 Response Regulator Gene Family AT3G57040 56.4 6.3e-39 157.9
Lsi06g01513 . 17 187 Response Regulator Gene Family AT1G74890 68.0 2.1e-54 209.1
Lsi04g00507 . 25 184 Response Regulator Gene Family AT1G74890 60.5 7.2e-47 184.1
Lsi09g00795 . 11 146 Response Regulator Gene Family AT1G74890 60.3 7.3e-39 157.5
Lsi03g01597 CCT 8 154 Response Regulator Gene Family AT1G74890 54.4 1.2e-38 156.8
Lsi04g01015 . 12 147 Response Regulator Gene Family AT1G74890 58.1 4.0e-37 151.8
Lsi04g01015 . 20 152 Response Regulator Gene Family AT2G40670 70.1 2.6e-47 185.3
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT2G40670 55.3 2.4e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT2G40670 56.2 1.2e-39 159.8
Lsi06g01513 . 33 165 Response Regulator Gene Family AT2G40670 60.3 6.4e-38 154.1
Lsi04g01015 . 20 152 Response Regulator Gene Family AT3G56380 71.6 1.3e-48 189.5
Lsi06g01513 . 18 165 Response Regulator Gene Family AT3G56380 57.0 2.2e-40 162.2
Lsi04g00507 . 26 159 Response Regulator Gene Family AT3G56380 54.1 4.9e-40 161.0
Lsi03g01597 CCT 6 156 Response Regulator Gene Family AT3G56380 53.9 1.9e-39 159.1
Lsi09g00795 . 11 154 Response Regulator Gene Family AT3G56380 55.2 3.0e-37 151.8
Lsi08g01621 . 52 256 Response Regulator Gene Family AT3G16857 53.8 1.7e-54 211.1
Lsi09g01466 . 38 263 Response Regulator Gene Family AT4G16110 67.1 9.3e-80 295.0
Lsi05g01569 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.6e-79 293.1
Lsi04g02085 . 12 233 Response Regulator Gene Family AT4G16110 59.7 6.7e-62 235.7
Lsi08g01621 . 10 235 Response Regulator Gene Family AT4G16110 54.5 5.3e-59 226.1
Lsi11g00368 . 18 251 Response Regulator Gene Family AT4G16110 55.0 1.8e-51 201.1
Lsi06g01039 . 17 235 Response Regulator Gene Family AT4G16110 52.0 2.7e-47 187.2
Lsi09g01466 . 37 292 Response Regulator Gene Family AT4G31920 55.9 4.6e-72 269.2
Lsi05g01569 . 16 271 Response Regulator Gene Family AT4G31920 53.7 2.8e-69 260.0
Lsi08g01621 . 11 259 Response Regulator Gene Family AT4G31920 50.4 5.6e-62 235.7
Lsi04g02085 . 93 255 Response Regulator Gene Family AT1G67710 55.0 9.8e-41 164.9
Lsi05g01569 . 99 262 Response Regulator Gene Family AT1G67710 54.7 6.4e-40 162.2
Lsi11g00368 . 15 348 Response Regulator Gene Family AT2G25180 54.4 2.2e-80 297.0
Lsi05g01569 . 18 291 Response Regulator Gene Family AT2G25180 55.6 3.9e-77 286.2
Lsi08g01621 . 11 256 Response Regulator Gene Family AT2G25180 55.6 1.1e-68 258.1
Lsi09g01466 . 100 333 Response Regulator Gene Family AT2G01760 51.4 7.2e-54 208.0
Lsi08g01621 . 72 259 Response Regulator Gene Family AT2G01760 51.0 1.6e-48 190.3
Lsi08g01621 . 9 258 Response Regulator Gene Family AT5G58080 51.0 1.3e-62 238.0
Lsi01g01374 . 38 185 Response Regulator Gene Family AT5G60100 60.9 6.4e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001295 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25950 PF00072 Response_reg 8.70E-22 CL0304 Lsi TF