Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01466 CTCTCTTTTTTCTTGTGGGTATTTGAGCCTTGTGGAATGGATCTGAGCCATATGAAGGGATCGATCCCGACGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCCGATCAGTTCCCGGCGGGTCTTCGCGTTCTGGTTGTAGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAATGCAACCGAGCGGAGATTGCATTATCCATGCTTCGTGAGAACAAAAATGGTTTTGATATTGTTTTAAGCGATGTACATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGTTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCTGTTCGGATAGAAGCACTTAGGAACATATGGCAACATGTAGTTCGAAAGCGAAAGACTGAATGGAAGGATTTAGAGCAATCTGGGAGCGTGGACGATGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACATTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAGCAGTTTGTTGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCAGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGTTTATATCTTAGAAGGCTTAGTGGAGTATCTCCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCATCTTTTGGGCCAATGGCCTCATTCAATGGGATTGATCTTCAAACGCTCTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCATCGGGACTTCGTAGGCCTACAGCGAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGCTTTGAAAATCCTAAACTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAATAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGTGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACACCAAACTGTAGGACAAACTCTAAGTAACTCTCCTGCTAGCCACTTAAGGAAGCCGATCGTATCAGGTAACGTTACGATGGGAAATGGGACTGCTCATAATAGCCACAGACCTGGATACAATCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCAAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTCGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAATGTAAGCACCTTGGCCTTTGGTACTTCTCATCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAACGAATGGACAAAATCAACATTCATCCGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCCGAGAATCCACAATGTATCGCTCAAAACTCGCTTCTCGATCCCATGGAGGTCAAAACTCAGAGAATCCCTGATGCAAGCTATCAAACTGACCTCATATCTGAGGACTTTGGCCAAGATGAACTTCTTGGTGTCTTTCTCAAACAACAGCTATGTTTTCCGTTTCCCAGCAACAAGGAGACAATGGATCGGTCGAATTTACCGGGTACCAAACGGAAAATATATGCGTTTAGAACATCTCTTGCTTTAGTTCCCCATTTGGTTGCAGCTTCAAATACACTTTGTTGTAACTTTAAAGATCAAAGTCTTCCCACATTAGATGACAGATTAGATGACAGAGGCAGTTCATCATTCTTGTCAACTAGTCCATTGTGA 2190 43.06 LSFFLWVFEPCGMDLSHMKGSIPTPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGFDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPSFGPMASFNGIDLQTLSVTGQLSPQSLAALQASGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTMGNGTAHNSHRPGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMSSYDVFSDLHLQKSHDWDSQNVSTLAFGTSHHGNFIQDSFDIPPSTLIHHGFPSSQTNGQNQHSSVIGKTIFSFSDSTQPENPQCIAQNSLLDPMEVKTQRIPDASYQTDLISEDFGQDELLGVFLKQQLCFPFPSNKETMDRSNLPGTKRKIYAFRTSLALVPHLVAASNTLCCNFKDQSLPTLDDRLDDRGSSSFLSTSPL 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22652653 22656596 + Lsi09G014660.1 Lsi09g01466 671079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01466 729 CDD REC_typeB_ARR-like 47 161 - -
Lsi09g01466 729 Pfam Myb-like DNA-binding domain 227 277 IPR001005 -
Lsi09g01466 729 ProSiteProfiles Response regulatory domain profile. 46 161 IPR001789 GO:0000160
Lsi09g01466 729 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 650 - -
Lsi09g01466 729 Pfam Response regulator receiver domain 47 155 IPR001789 GO:0000160
Lsi09g01466 729 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 650 IPR045279 GO:0009736
Lsi09g01466 729 Gene3D - 222 284 - -
Lsi09g01466 729 PIRSF RR_ARR_type-B 27 650 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lsi09g01466 729 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 281 IPR017930 -
Lsi09g01466 729 SMART REC_2 45 157 IPR001789 GO:0000160
Lsi09g01466 729 MobiDBLite consensus disorder prediction 168 185 - -
Lsi09g01466 729 MobiDBLite consensus disorder prediction 168 222 - -
Lsi09g01466 729 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
Lsi09g01466 729 MobiDBLite consensus disorder prediction 202 222 - -
Lsi09g01466 729 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 225 278 IPR006447 GO:0003677
Lsi09g01466 729 MobiDBLite consensus disorder prediction 186 201 - -
Lsi09g01466 729 SUPERFAMILY CheY-like 44 168 IPR011006 -
Lsi09g01466 729 Gene3D - 45 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01039 Lsi-Chr6:20575480 Lsi09g01466 Lsi-Chr9:22652653 1.48E-76 dispersed
Lsi06g01134 Lsi-Chr6:21595171 Lsi09g01466 Lsi-Chr9:22652653 3.53E-58 dispersed
Lsi08g01621 Lsi-Chr8:24136876 Lsi09g01466 Lsi-Chr9:22652653 1.42E-95 dispersed
Lsi09g01466 Lsi-Chr9:22652653 Lsi11g00368 Lsi-Chr11:3798647 4.74E-91 dispersed
Lsi02g02442 Lsi-Chr2:30976882 Lsi09g01466 Lsi-Chr9:22652653 5.07E-10 wgd
Lsi05g01569 Lsi-Chr5:23459437 Lsi09g01466 Lsi-Chr9:22652653 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25950 PF00072 Response_reg 8.70E-22 CL0304 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01466 - K14491 csv:101210138 1184.09