Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01478 ATGTCTCTCACCATGAAAGCTGACGTTCAAGGAAACCTTGTTGGCTCAGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTTCAAGATGGCTTCGCCCAAATGAAATCCATGCAATATTGTGTAACTACAAATATTTCACCATTCACGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACCCAACCTTTGTTCGTCGGTGTTACTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCTACATCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGAGCTACTCATGTTTATTCTGGTGGTGAAAATGAATTATCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGAGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGACGGATGAACCTTTCAAACCTGCCATGCCTAAAGGAGGCAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAATGTGACCAACAATTTATTGGGGGAGATGTCTTCATTTAATAATCCAGTTGAGTCTACTGGGAAGGCCAACGGCAATATCAGTTTCACAGGAAGTGCCAATCTGTCGTTAGGTGGTCAAACAAATTTGAATGTAGAGAAGAGTGAATCCATCCCAGTTAATTCTTTGGACAATTTGTTAAATGAGGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATAAATGAAGTTATCACGGACTCTCCCGGTTCAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCTGTTCATAATTCCTATTTTGATTCAACATTATATCACCGTCAAACTTCGGCCATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGGTCCTCTCTTCTCCTAGTACCGAATCTTCACAGTTCCTTGACTTAAGCACACTCTTTTCTTTTTCCTTGTTTAAATTAAGTCTAGTATCTCTTATTCTAATTGTTGGATATTTTCACAATGACTTCGTACATCTAACAAAGTCCAATCTATTGGTTGTATGTGGTGATACAAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACCACCACATTCACCGGGACTAGTACATTTATATGTGAGCTTAGATGGCCACAAACCTATTAGTCAAGCTCTGAATTTTGAGTATCGTTCACCAAATTTACAAGTGCCTGTAGTTGCATCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTTCATCCAAGATCCTGAGCATCATGTCAACTAGATTGTCGCCCACTGTCCTGCAAGAGGCCAAGAAACTCGCTGTCAAAACTTCTGACATTTCAGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAGGCAAGGGAAGGTGTTCTTGAGATCATATTGAGAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATTTTGGGATATACCTGGGCTATACATCTATTTTTCTTGTCTGGTTTATCAATAGACTTCCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTCGCTGTTCTTTTATCAGTGGGTGCAAGGCCAAACTTGGTCACTGATCCCACATCAAAGAACCCTGAGGGATGTACAGCTGCAGATCTTGCATCTATAAATGGTTATGATGGCTTAGCTGCGTATCTTTCTGAAAAGGCTTTGGTATCACACTTTGAAGAGATGAGCTTGGCTGGAAATATTAGTGGCTCGTTGGATACTAGTAGTACAATAACTGAAGCCTCTGATTGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACGGCAGCTGATGCAGCAGCACGCATACAAACTGCATTCCGTGAACATTCTTTAAAACAAAGAACTGATGCAATTGAATTCTCCACCCCTGAAGCTGAAGCACGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGTAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGCACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGAAAGATTGTTTGGTCGGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGAGGTAGAAAAGCAGGAAATTGGCATAGAAGAGGACTTCTACCGTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGTAGGATGAGGTTAACCTATGATGAAGCAGCGGTGAGTTAA 2802 41.22 MSLTMKADVQGNLVGSEIHGFHTLQDLDVKNIREEASSRWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSTSMNSNSGSVSNPSTPWLLSEELDSRATHVYSGGENELSEPSDTTTVMTHEQRLHEINTLEWDDLLVTDEPFKPAMPKGGKLSCFDQQNQVPINVTNNLLGEMSSFNNPVESTGKANGNISFTGSANLSLGGQTNLNVEKSESIPVNSLDNLLNEGLQSQDSFGRWINEVITDSPGSVIDPAIEPSISSVHNSYFDSTLYHRQTSAMEQIFNITDVSPAWAFSTEKTKVLSSPSTESSQFLDLSTLFSFSLFKLSLVSLILIVGYFHNDFVHLTKSNLLVVCGDTSVNVDFVQPGVYRCLVPPHSPGLVHLYVSLDGHKPISQALNFEYRSPNLQVPVVASEQIQKWEEFQVQMRLAHLLFSSSKILSIMSTRLSPTVLQEAKKLAVKTSDISDSWIYLLKSITENRTPFQQAREGVLEIILRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAIHLFFLSGLSIDFRDKSGWTALHWAAYYGRERMVAVLLSVGARPNLVTDPTSKNPEGCTAADLASINGYDGLAAYLSEKALVSHFEEMSLAGNISGSLDTSSTITEASDCISEEQMYMKETLAAYRTAADAAARIQTAFREHSLKQRTDAIEFSTPEAEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPAEEVEKQEIGIEEDFYRVSQKQAEERVERAVIRVQAMFRSKKAQEEYRRMRLTYDEAAVS 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22843357 22855123 + Lsi09G014780.1 Lsi09g01478 671091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01478 933 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Lsi09g01478 933 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Lsi09g01478 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 849 IPR027417 -
Lsi09g01478 933 Pfam IPT/TIG domain 429 484 IPR002909 -
Lsi09g01478 933 Pfam Ankyrin repeats (3 copies) 584 664 IPR002110 GO:0005515
Lsi09g01478 933 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 932 - -
Lsi09g01478 933 SMART ANK_2a 635 664 IPR002110 GO:0005515
Lsi09g01478 933 SMART ANK_2a 674 703 IPR002110 GO:0005515
Lsi09g01478 933 Gene3D - 800 846 - -
Lsi09g01478 933 SUPERFAMILY E set domains 414 485 IPR014756 -
Lsi09g01478 933 SMART CG_1_2 32 150 IPR005559 GO:0003677
Lsi09g01478 933 Gene3D - 553 700 IPR036770 -
Lsi09g01478 933 ProSiteProfiles IQ motif profile. 901 929 IPR000048 GO:0005515
Lsi09g01478 933 ProSiteProfiles Ankyrin repeat region circular profile. 635 663 - -
Lsi09g01478 933 ProSiteProfiles IQ motif profile. 822 846 IPR000048 GO:0005515
Lsi09g01478 933 SUPERFAMILY Ankyrin repeat 597 697 IPR036770 -
Lsi09g01478 933 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Lsi09g01478 933 Pfam IQ calmodulin-binding motif 824 843 IPR000048 GO:0005515
Lsi09g01478 933 MobiDBLite consensus disorder prediction 149 170 - -
Lsi09g01478 933 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 932 - -
Lsi09g01478 933 SMART iq_5 899 921 IPR000048 GO:0005515
Lsi09g01478 933 SMART iq_5 798 820 IPR000048 GO:0005515
Lsi09g01478 933 SMART iq_5 821 843 IPR000048 GO:0005515
Lsi09g01478 933 Gene3D Immunoglobulins 361 488 IPR013783 -
Lsi09g01478 933 ProSiteProfiles IQ motif profile. 799 826 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01478 Lsi-Chr9:22843357 Lsi09g01722 Lsi-Chr9:25791157 7.81E-38 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25954 PF03859 CG-1 1.70E-45 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01478 K21596 - csv:101211298 1605.11