Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01478 ATGTCTCTCACCATGAAAGCTGACGTTCAAGGAAACCTTGTTGGCTCAGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTTCAAGATGGCTTCGCCCAAATGAAATCCATGCAATATTGTGTAACTACAAATATTTCACCATTCACGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACCCAACCTTTGTTCGTCGGTGTTACTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCTACATCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGAGCTACTCATGTTTATTCTGGTGGTGAAAATGAATTATCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGAGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGACGGATGAACCTTTCAAACCTGCCATGCCTAAAGGAGGCAAACTTTCATGCTTTGACCAACAGAACCAAGTCCCAATAAATGTGACCAACAATTTATTGGGGGAGATGTCTTCATTTAATAATCCAGTTGAGTCTACTGGGAAGGCCAACGGCAATATCAGTTTCACAGGAAGTGCCAATCTGTCGTTAGGTGGTCAAACAAATTTGAATGTAGAGAAGAGTGAATCCATCCCAGTTAATTCTTTGGACAATTTGTTAAATGAGGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATAAATGAAGTTATCACGGACTCTCCCGGTTCAGTCATTGATCCTGCTATTGAGCCATCCATTTCATCTGTTCATAATTCCTATTTTGATTCAACATTATATCACCGTCAAACTTCGGCCATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGGTCCTCTCTTCTCCTAGTACCGAATCTTCACAGTTCCTTGACTTAAGCACACTCTTTTCTTTTTCCTTGTTTAAATTAAGTCTAGTATCTCTTATTCTAATTGTTGGATATTTTCACAATGACTTCGTACATCTAACAAAGTCCAATCTATTGGTTGTATGTGGTGATACAAGTGTTAATGTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACCACCACATTCACCGGGACTAGTACATTTATATGTGAGCTTAGATGGCCACAAACCTATTAGTCAAGCTCTGAATTTTGAGTATCGTTCACCAAATTTACAAGTGCCTGTAGTTGCATCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTTCATCCAAGATCCTGAGCATCATGTCAACTAGATTGTCGCCCACTGTCCTGCAAGAGGCCAAGAAACTCGCTGTCAAAACTTCTGACATTTCAGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAGGCAAGGGAAGGTGTTCTTGAGATCATATTGAGAAGTAGGTTAAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATTTTGGGATATACCTGGGCTATACATCTATTTTTCTTGTCTGGTTTATCAATAGACTTCCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTCGCTGTTCTTTTATCAGTGGGTGCAAGGCCAAACTTGGTCACTGATCCCACATCAAAGAACCCTGAGGGATGTACAGCTGCAGATCTTGCATCTATAAATGGTTATGATGGCTTAGCTGCGTATCTTTCTGAAAAGGCTTTGGTATCACACTTTGAAGAGATGAGCTTGGCTGGAAATATTAGTGGCTCGTTGGATACTAGTAGTACAATAACTGAAGCCTCTGATTGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACGGCAGCTGATGCAGCAGCACGCATACAAACTGCATTCCGTGAACATTCTTTAAAACAAAGAACTGATGCAATTGAATTCTCCACCCCTGAAGCTGAAGCACGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGTAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGCACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGAAAGATTGTTTGGTCGGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTTCAAGTTGCACCTGCTGAAGAGGTAGAAAAGCAGGAAATTGGCATAGAAGAGGACTTCTACCGTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAGGAGTATCGTAGGATGAGGTTAACCTATGATGAAGCAGCGGTGAGTTAA 2802 41.22 MSLTMKADVQGNLVGSEIHGFHTLQDLDVKNIREEASSRWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSTSMNSNSGSVSNPSTPWLLSEELDSRATHVYSGGENELSEPSDTTTVMTHEQRLHEINTLEWDDLLVTDEPFKPAMPKGGKLSCFDQQNQVPINVTNNLLGEMSSFNNPVESTGKANGNISFTGSANLSLGGQTNLNVEKSESIPVNSLDNLLNEGLQSQDSFGRWINEVITDSPGSVIDPAIEPSISSVHNSYFDSTLYHRQTSAMEQIFNITDVSPAWAFSTEKTKVLSSPSTESSQFLDLSTLFSFSLFKLSLVSLILIVGYFHNDFVHLTKSNLLVVCGDTSVNVDFVQPGVYRCLVPPHSPGLVHLYVSLDGHKPISQALNFEYRSPNLQVPVVASEQIQKWEEFQVQMRLAHLLFSSSKILSIMSTRLSPTVLQEAKKLAVKTSDISDSWIYLLKSITENRTPFQQAREGVLEIILRSRLREWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAIHLFFLSGLSIDFRDKSGWTALHWAAYYGRERMVAVLLSVGARPNLVTDPTSKNPEGCTAADLASINGYDGLAAYLSEKALVSHFEEMSLAGNISGSLDTSSTITEASDCISEEQMYMKETLAAYRTAADAAARIQTAFREHSLKQRTDAIEFSTPEAEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPAEEVEKQEIGIEEDFYRVSQKQAEERVERAVIRVQAMFRSKKAQEEYRRMRLTYDEAAVS 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22843357 22855123 + Lsi09G014780.1 Lsi09g01478 671091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01478 933 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515
Lsi09g01478 933 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Lsi09g01478 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 849 IPR027417 -
Lsi09g01478 933 Pfam IPT/TIG domain 429 484 IPR002909 -
Lsi09g01478 933 Pfam Ankyrin repeats (3 copies) 584 664 IPR002110 GO:0005515
Lsi09g01478 933 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 932 - -
Lsi09g01478 933 SMART ANK_2a 635 664 IPR002110 GO:0005515
Lsi09g01478 933 SMART ANK_2a 674 703 IPR002110 GO:0005515
Lsi09g01478 933 Gene3D - 800 846 - -
Lsi09g01478 933 SUPERFAMILY E set domains 414 485 IPR014756 -
Lsi09g01478 933 SMART CG_1_2 32 150 IPR005559 GO:0003677
Lsi09g01478 933 Gene3D - 553 700 IPR036770 -
Lsi09g01478 933 ProSiteProfiles IQ motif profile. 901 929 IPR000048 GO:0005515
Lsi09g01478 933 ProSiteProfiles Ankyrin repeat region circular profile. 635 663 - -
Lsi09g01478 933 ProSiteProfiles IQ motif profile. 822 846 IPR000048 GO:0005515
Lsi09g01478 933 SUPERFAMILY Ankyrin repeat 597 697 IPR036770 -
Lsi09g01478 933 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Lsi09g01478 933 Pfam IQ calmodulin-binding motif 824 843 IPR000048 GO:0005515
Lsi09g01478 933 MobiDBLite consensus disorder prediction 149 170 - -
Lsi09g01478 933 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 932 - -
Lsi09g01478 933 SMART iq_5 899 921 IPR000048 GO:0005515
Lsi09g01478 933 SMART iq_5 798 820 IPR000048 GO:0005515
Lsi09g01478 933 SMART iq_5 821 843 IPR000048 GO:0005515
Lsi09g01478 933 Gene3D Immunoglobulins 361 488 IPR013783 -
Lsi09g01478 933 ProSiteProfiles IQ motif profile. 799 826 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01478 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1605.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01478 Lsi-Chr9:22843357 Lsi09g01722 Lsi-Chr9:25791157 7.81E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25954 PF03859 CG-1 1.70E-45 No_clan Lsi TF