Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01486 ATGGCATTTTGGTGGACTCTGATTGTTCTTGGATTTGCTTACGCGATCTGTAGGTTACTCTTGATGCTCATCCCTCCGAATGTGCCTTCAATCGAAGTTGACGCATCTGATGTTATGGACGACGGGAATCAGACGCAGGAGAATAGCTACATCTACATTCCACCTAGGGTAAAGACACAACAGCAAGATAAGAGAGTCCAGTGTTATGAGCCTGCAACTATGAAATACCTGGGCTATTTTCCAGCATTGTCACGAGACGAGGTCAAGGAGCGTGTTGCTTCAGCTAGGAAAGCGCAGAAAGAATGGGCCAAAAGTAGCTTCAAACAAAGGCGTTTGCTTTTACGGATACTTTTGAAATACATTATTGAACATCAAGAGCTCATTTGCGAGATCTCCTCCCGTGAAACTGGAAAAACAATAGTGGATGCTAATATGGGAGAAGTAATGGCGACATGTGAAAAGATTACTTGGCTTCTTTCAGAGGGTGAGAAATGGCTGAAGCCTGAGAGCCGATCATGTGGAAGGGCAACACTTCACAAGAAAGCCCGAGTAGAATTTCATCCCCTTGGAGTTATCGGGGCGATAGTCCCATGGAACTATCCATTCCATAACATTTTCAATCCAGTGCTTGCAGCAGTCTTTGCAGGAAACGGCATTGTAGTTAAGGTTTCAGAACATGCAAGTTGGTCAGGATGCTTTTATGTCAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGTTTAGTTGATGTGATAACAGGGTTTGCTGAAACAGGTGAAGCGCTAGTATCTTCAGTAGACAAAATGATATTTGTTGGATCTACTGGTGTGGGCAGGATGATAATGAAAACTGCTGCTGAGACACTTATTCCAGTTACTCTTGAGTTGGGTGGAAAGGACGCATTTATCGTGTGTGAGGATGTAGATCTGGATCACGTTGTAAACGTTGCTCTCAGGGCTTCTATTACATCAAGTGGACATAATTGTACTGGAGCTGAGAGATTTTATGTCCACAAGAACATTTATTCTTCGTTTGTGGATAAAATATCAGAACGTGTAAAGGCTATTACAGTTGGTCCACCATTAGCTGGGAAATATGATATGGGTGCTATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTTGTTAATGATGCCTTAGACAGAGGGGCAAAAATTGTTGCTCGTGGAACTTTTGGACATCTACCTGAAGGTGCCGTTGATCAATATTTCCCGCCCACCGTTATTGTTGATGTCAACCATACGATGAAGTTAATGCAAGAGGAGGCATTTGGACCAATCCTGCCTATAATGAAATTCAGCACAGATGATGAGGCTGTAAAGCTTGCAAATGATTCGAGGTTTGGGCTTGGCTGTGCTGTCTTTTCTGGCAGTCAGCGGCGTGCCAAGAATATTGCTTCGCAGATACATTCTGGAAGTGTTGCAATTAATGACTTTGCCACAAATTATTTGTGTCAGTCCTTGCCATTTGGTGGCGTAAAAGAGAGTGGATTCGGCCGATTTGCGGGCGTTGAAGGATTACGAGCTTGTTGTCTTGTTAAAGCAGTAGTTGAGGATAGATGGTGGCCATACATTCAGACTAAGCATCCTAAGCCTCTTACGTATCCTGTTGCAGACAACGCCTTTGAGTTTCAGATGTCACTGGTTGAAGCAACGTACGGGCTGAACATATGGGATCGATTAAGAGCATTGGTTAATGTTCTGAAGATGCTGTCCGAGCAGAACACTCCGGCTAAAGATAACTCTACCGTTGATGATGGAATTCTTCCCTTCCAATCTAAATTCAGAAGCAACACAAAAATGGCGGACCCCAAAACCAGAGCTCAACTCGGCGGAGGAATGACCGCCACCGACGCATGGCTCAGAAAGCACCGTCTCATCTACACGGAGGCAACACGCCATCCTTTCGTCCTCACCATTCGCGACGACACCGTCGATCTCTCCGCCTTCAGAACCTGGCTGGAACAGGAGTGCGAATTTCTCCGATCTTTCGCTGCATTCGTCGGAAGTGTATTGGTGAAAGCATGGAAAGAATCGGACAATCGAGCGGACGAGGAAGTGATTCTCGGAAGTTTAGCATCTCTTAGCGACGAATTGGCGTGGTTCAAGAAAGAAGCCCTAAAACGAGACATCAATTTGACTGAAATTGTTCCTCAGAAAGCCACCGCCGGCTATTCCAGGTACAGATCGAGACCTGCATCGGCAAAATCACAGGCAAGATCACAGGCAAGATCACTTCAATTTTTTCTTTGTTTGTTGTTTCTGGAGAGTCTGATGAGGCCGGAAGTAGACTACACGGTAGCGATTACGGCGCTTTGGGGGATGGAAACTGTGTACCATGAGAGCTTTGCGTATTGCTTAGAAGAAGGAACAAAAACGCCATTGGAATTGAGAGAAGGTTGCGAAAGATGGGGGAATGAAGGATTTGGGAAGTACTGCAATAGGTTGAAGGAGATTGCGGATAGGAGATTGGAAATGAGGAGTGGAGAAGTGAGTAAAAAAGCAGAAGTGGGTTTGTTGAGAGTTCTTGAATATGAAATTGGGTTTTGGAATATGATCCGCCCTCATCCCCACTACACTGCTCCGGTTGTTGGAGGGTTTTAA 2637 45.2 MAFWWTLIVLGFAYAICRLLLMLIPPNVPSIEVDASDVMDDGNQTQENSYIYIPPRVKTQQQDKRVQCYEPATMKYLGYFPALSRDEVKERVASARKAQKEWAKSSFKQRRLLLRILLKYIIEHQELICEISSRETGKTIVDANMGEVMATCEKITWLLSEGEKWLKPESRSCGRATLHKKARVEFHPLGVIGAIVPWNYPFHNIFNPVLAAVFAGNGIVVKVSEHASWSGCFYVRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKTAAETLIPVTLELGGKDAFIVCEDVDLDHVVNVALRASITSSGHNCTGAERFYVHKNIYSSFVDKISERVKAITVGPPLAGKYDMGAICTQEQSEKLQSLVNDALDRGAKIVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFSTDDEAVKLANDSRFGLGCAVFSGSQRRAKNIASQIHSGSVAINDFATNYLCQSLPFGGVKESGFGRFAGVEGLRACCLVKAVVEDRWWPYIQTKHPKPLTYPVADNAFEFQMSLVEATYGLNIWDRLRALVNVLKMLSEQNTPAKDNSTVDDGILPFQSKFRSNTKMADPKTRAQLGGGMTATDAWLRKHRLIYTEATRHPFVLTIRDDTVDLSAFRTWLEQECEFLRSFAAFVGSVLVKAWKESDNRADEEVILGSLASLSDELAWFKKEALKRDINLTEIVPQKATAGYSRYRSRPASAKSQARSQARSLQFFLCLLFLESLMRPEVDYTVAITALWGMETVYHESFAYCLEEGTKTPLELREGCERWGNEGFGKYCNRLKEIADRRLEMRSGEVSKKAEVGLLRVLEYEIGFWNMIRPHPHYTAPVVGGF 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22905880 22922027 - Lsi09G014860.1 Lsi09g01486 671099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01486 878 Pfam TENA/THI-4/PQQC family 633 750 IPR004305 -
Lsi09g01486 878 Pfam TENA/THI-4/PQQC family 775 864 IPR004305 -
Lsi09g01486 878 Gene3D - 624 864 IPR016084 -
Lsi09g01486 878 CDD ALDH_F15-22 69 531 - -
Lsi09g01486 878 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491
Lsi09g01486 878 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491
Lsi09g01486 878 SUPERFAMILY Heme oxygenase-like 641 863 IPR016084 -
Lsi09g01486 878 CDD TenA_E_At3g16990-like 628 863 - -
Lsi09g01486 878 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491
Lsi09g01486 878 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620
Lsi09g01486 878 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 1 561 - -
Lsi09g01486 878 SUPERFAMILY ALDH-like 50 529 IPR016161 GO:0016491
Lsi09g01486 878 PANTHER ALDEHYDE DEHYDROGENASE-LIKE PROTEIN YHR039C-RELATED 1 561 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01486 Lsi-Chr9:22905880 Lsi11g00444 Lsi-Chr11:4619163 2.45E-53 dispersed
Lsi10g01057 Lsi-Chr10:14796703 Lsi09g01486 Lsi-Chr9:22905880 1.04E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01486 - - csv:101209796 1137.48