Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01493 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCACCTCCGACCACCAAATCCACCACCACCATCATCACCATCAGCGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGAAGAAGAGGTGGCGCTTCTGGAGGTTTAGACGCCGCTGCCGCCGCCTGGAAAAGAGGCTCTTCCTCGTTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGTGACCCTTTAAATGCCGCCGCCGCCGCCGGAGGTGGCGGCGGCTGCGGCGGCTCTGGCCCCGCAGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAACCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAATTCTTCGTGTCATGGCTGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCACTAACACTCCATTCTACGACGACGGTGCATTGGTTGGGATTATCTGCGTATCGAGCGATTCGCGGCCATTTCAAGATTTGAAGATTCCTTTATCAGTAGGTTATAAACAGCAGGATGCAGATTCAAGCATGGTCCGATCACGAATCCCGGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATCGCTTCAAAGTTATCAAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCGAAAATTCGAACTGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCATGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCGAGTGGAGCTAGCACACCTCGAGGAGATTCCACGGCTCCTGGTGCGTTTTCCCAGGTTGAGGAGAAGTTATCTGGCAAACTGGTGAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATTTTATCCTCAAAAGCTGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCGTGGAAAGGGACTGAGCAGGAAGGAGGATCTGAAACAAGGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAACCGAACCAGCTAATCACAAGAGTTCCTCTATATCTGGGAAACCAGAAATGCAGCAAAACGACGGTCATCGAGCAGTTAATAACGAGGCGTCGGGATCTTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGGAGTACCAGTAGTAGTGCTGTTAACAAAGTTGACACGGATATGGACTGCTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGTATGTTCACTTATCCTTTCAATTGCTTTAGTTATGCTGTTGTGTCAAGACGTTGCAGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAGTTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGTTGGAGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCGCCTGAAGTTCTTCGTAACGAGCCCTCGGATGAGAACGAGCCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAGATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGCTGGAGAGAATAACAATAACAATAACAACAATAATATCCCTCAAAAGGAAACATAA 2157 46.64 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSTSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGASGGLDAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAAAAGGGGGCGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVILRVMAGENWTGHLPVKNKMGQKFIVVATNTPFYDDGALVGIICVSSDSRPFQDLKIPLSVGYKQQDADSSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSGDSYHSDHGYPEAVLCDHRDDANSSGASTPRGDSTAPGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETRAARFVWPWLQIDQETEPANHKSSSISGKPEMQQNDGHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDMDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSVCSLILSIALVMLLCQDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDENEPSNRPSFQVLIEKLREMQRKFAMQLQAARSAGENNNNNNNNNIPQKET 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22981246 22986890 + Lsi09G014930.1 Lsi09g01493 671106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01493 718 MobiDBLite consensus disorder prediction 343 357 - -
Lsi09g01493 718 ProSiteProfiles PAS repeat profile. 131 202 IPR000014 -
Lsi09g01493 718 MobiDBLite consensus disorder prediction 695 718 - -
Lsi09g01493 718 Pfam PAS fold 134 239 IPR013767 GO:0006355
Lsi09g01493 718 Pfam Protein tyrosine and serine/threonine kinase 508 629 IPR001245 GO:0004672|GO:0006468
Lsi09g01493 718 SUPERFAMILY Protein kinase-like (PK-like) 499 667 IPR011009 -
Lsi09g01493 718 CDD PAS 142 242 IPR000014 -
Lsi09g01493 718 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 630 669 - -
Lsi09g01493 718 Gene3D Phosphorylase Kinase; domain 1 501 601 - -
Lsi09g01493 718 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 242 IPR035965 -
Lsi09g01493 718 Coils Coil 6 26 - -
Lsi09g01493 718 MobiDBLite consensus disorder prediction 368 382 - -
Lsi09g01493 718 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 37 629 - -
Lsi09g01493 718 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 630 669 - -
Lsi09g01493 718 MobiDBLite consensus disorder prediction 698 718 - -
Lsi09g01493 718 MobiDBLite consensus disorder prediction 434 460 - -
Lsi09g01493 718 ProSiteProfiles Protein kinase domain profile. 508 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01493 718 MobiDBLite consensus disorder prediction 33 116 - -
Lsi09g01493 718 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 629 - -
Lsi09g01493 718 SMART pas_2 133 200 IPR000014 -
Lsi09g01493 718 TIGRFAM sensory_box: PAS domain S-box protein 133 242 IPR000014 -
Lsi09g01493 718 Gene3D Transferase(Phosphotransferase) domain 1 629 670 - -
Lsi09g01493 718 MobiDBLite consensus disorder prediction 305 384 - -
Lsi09g01493 718 Gene3D PAS domain 143 245 - -
Lsi09g01493 718 MobiDBLite consensus disorder prediction 305 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01493 Lsi-Chr9:22981246 Lsi07g01075 Lsi-Chr7:16102866 1.34E-22 dispersed
Lsi09g01493 Lsi-Chr9:22981246 Lsi01g01250 Lsi-Chr1:10677564 2.37E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83915 PF07714 PK_Tyr_Ser-Thr 7.30E-19 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01493 - - bhj:120067055 1110.13