Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01500 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCGTTCGGGCATCCTACTGATAATTTCACCTCTGTTGGTGTTATTGGGACCAATTGTGGTGCCAAAGACACCAAGGATAGCTTGCTTTGGTTTTATGATTATGGTAAGTATGCTTCCGGTGAATTCTCCATGGCTGTTGTTCAAGCCAACCAAGTTCTTGAGGACCAGAGCCAAATTGAATCTGGCCCTTTTGGTACTTTCCTCGGAATCTACGATGGTCATGGCGGCCCTGACGCCGCTCGATACGTCTGTGATAACTTGTTTAGACGTTTCCAAGATGAGCAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCGAACAGAGGAAGGGTTCACGGCTGTTGTGTCGGAGTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACATGCTGTTTAGTAGGGGTGATACATGAGCAGACACTCTACATTGCGAGTCTAGGAGATTCTCGTGCCGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAATTATCAACTGAGCATAATGCAAATCTTGAGGAAATCAGGGAAGAATTAAGGGTCATGCATCCAAATGATCCTCAAATCGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATTTGAAACATGCTCAGTATAATAATGAAAGAATCAATGCTAAATTTAGACTTCCTGAACCAATGGACAGGCCTATATTGACTGCTGTACCTACGATTATTGCTCACCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGAGATTGTCCATAATCATCCACGTGCTGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTCGAAAACGAGAGATGCGGTATTCAGATCTTCGAAAGATCGATAAGAAGGTTCGGCGTCATTTTCATGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGATCTTATATCCAGAAGCAATGTCCTCCTAGATCAACCATTATCAGTAAGAAGTGCTTTTGATCATTGA 1134 43.56 MLRGFMNLLSLCWKPFGHPTDNFTSVGVIGTNCGAKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFLGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTRETILNAFRRTEEGFTAVVSELWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEEIREELRVMHPNDPQIVVQRHGVWRVKGIIQVSRSIGDVYLKHAQYNNERINAKFRLPEPMDRPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRSAFDH 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23028473 23033646 + Lsi09G015000.1 Lsi09g01500 671113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01500 377 SMART PP2C_4 49 351 IPR001932 -
Lsi09g01500 377 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Lsi09g01500 377 CDD PP2Cc 56 353 IPR001932 -
Lsi09g01500 377 Gene3D - 47 362 IPR036457 -
Lsi09g01500 377 PANTHER ALPHABET, ISOFORM E-RELATED 4 377 - -
Lsi09g01500 377 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Lsi09g01500 377 Pfam Protein phosphatase 2C 80 323 IPR001932 -
Lsi09g01500 377 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 4 377 - -
Lsi09g01500 377 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01500 Lsi-Chr9:23028473 Lsi11g01215 Lsi-Chr11:20727281 1.27E-149 dispersed
Lsi09g01500 Lsi-Chr9:23028473 Lsi10g00506 Lsi-Chr10:7237062 6.81E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01500 K01102 - csv:101207284 734.176