Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01505 ATGTTTAAGCTTATTGCAATTGTTTCGGCGAACATGCAAGCTTCGTACGGAGGAGGATACGAAAATATGCCACCGTTCGGCACACCCTCTATCTGCCCGGAGGCAGAAGCCATCATCTTCTCTTGGGTTCAAACTGCCATCGCCGAAGACCCCCGAATGGCAGCATCTTTGCTTCGACTCCATTTCCACGACTGCTTTGGGTGTGATGCTTCTGTTTTGCTGGATGACAATGAGAACTTTGTAGGTGAAAAGACAGCAGCTCCAAATGTGAACTCACTAAGGGGATTTGAAGTGATTGATGCTATAAAATCTGAGATTGAATCTGTTTGCCCACAGACAGTTTCATGTGCTGACATTCTAGCAATTGCAGCCAGAGACTCTGTTGGACTATCAGGAGGGCCCTTTTGGAAAGTGGAATTTGGAAGAGGAGATAGCATAAGTGCTAGCAAATCAGCAGCACAAAACAACATTCCTGGCCCAAACTCCACTGTGGCTACCCTAGTTTCTAAGTTCCAGAACCTTGGCCTTTCTCTCAGAGATATGGTTGCTCTCTCAGGGGGGCACACACTGGGAAAAGCCAGATGTGTTTCATTCAGTTCTAGGCTGCAAGCCAATGGCGGCAGCCCCAACGAAGGAGCAAACCAAGAGTTTATCGAGTCACTAAAACAGCTCTGCTCGGTATCTGGTAGTAGCTCTACACTGGCACAGCTTGACGTTGTAACCCCGGCAACATTCGACAACCAGTATTACATTAATCTTCTCTCTGGAGAAGGGTTACTCCAGTCTGATCATGTTCTTGTGACTGGGGATTACCAGACAAGAGAGATAGTTGAAACCTACGCCGTTGACCCAGTTGCCTTCTTTGAAGATTTCAAGCAGTCAATGGTGAAAATGGGAAGCCTCAAACCACCCACTGGAACACAGACCGTGATCCGAACTAATTGCCGAACTGTAAGCTAG 960 47.29 MFKLIAIVSANMQASYGGGYENMPPFGTPSICPEAEAIIFSWVQTAIAEDPRMAASLLRLHFHDCFGCDASVLLDDNENFVGEKTAAPNVNSLRGFEVIDAIKSEIESVCPQTVSCADILAIAARDSVGLSGGPFWKVEFGRGDSISASKSAAQNNIPGPNSTVATLVSKFQNLGLSLRDMVALSGGHTLGKARCVSFSSRLQANGGSPNEGANQEFIESLKQLCSVSGSSSTLAQLDVVTPATFDNQYYINLLSGEGLLQSDHVLVTGDYQTREIVETYAVDPVAFFEDFKQSMVKMGSLKPPTGTQTVIRTNCRTVS 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23101471 23102970 + Lsi09G015050.1 Lsi09g01505 671118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01505 319 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PANTHER PEROXIDASE 72-RELATED 25 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 Gene3D Peroxidase, domain 2 158 299 - -
Lsi09g01505 319 Pfam Peroxidase 43 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Lsi09g01505 319 CDD secretory_peroxidase 32 318 IPR033905 GO:0004601|GO:0042744
Lsi09g01505 319 PANTHER PEROXIDASE 40 25 318 - -
Lsi09g01505 319 Gene3D - 31 318 - -
Lsi09g01505 319 SUPERFAMILY Heme-dependent peroxidases 30 318 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi09g01505 319 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
Lsi09g01505 319 ProSiteProfiles Plant heme peroxidase family profile. 20 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00055 Lsi-Chr5:1137953 Lsi09g01505 Lsi-Chr9:23101471 7.87E-64 dispersed
Lsi09g01505 Lsi-Chr9:23101471 Lsi10g01475 Lsi-Chr10:18880440 4.03E-95 dispersed
Lsi09g01505 Lsi-Chr9:23101471 Lsi01g00641 Lsi-Chr1:5166953 1.10E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01505 K00430 - csv:101205763 599.356