Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01506 ATGCCTCGCTGTCATCGCCATGCCATTGTCACGACTCACTATCCTCAAGAGGACTGCACGAATTTGGGTATTCGATTTCTTACTTCCGCAAAGCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCCTACCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCCGTGAACCATCACGACACTCGCCGGAGCCCCAATAACTTCCGCGGCGGCGTTACTGGAGCTAACCGTCGGCCTTTCGACAGTCCGCCCCGATACTCTACTCCCGCTGCTGCTGGTTTTCGCCCCATGGGAGCTGGCGGGGGATTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCAGTTTCCAACCGCCACCTGTTGCAGGACAGAAACGGGCTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAGATCATTCTGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAAATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGGAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCAATTCAAGTTAGATATGCTGATGGGGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATCTTTTCTCCCTATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGATATGGCACTGGCGGCTATAAATGCTCTCAATGGAATCTTTACAATGAGAGGCTGTGATCAACCGTTAAGTGTCCGCTTTGCCGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCAGGTTTTGGTTCTCGCTTTCAAGCACCTGGGCCAAGACCAATGCCTAATTTTGGTGAATTTATGGGCGATCGAATTCCAATTGATGTACGAGGTTTCAGGCCACCTGTAGATGCTGGTATTCATCCCTTTGGGGGTCAGTTACCTCCTAGGTCGAGTGAAATGGGACCACCTTTGAATTTGGGTGGTCCTGCTAGTGGGTTTAGAGGTCCCAATCAAGGGTTGCTCAATCCAGCATCCTCAGCTTCTCAACTGAATTTTAATCAGTCTGCAAGCCAACATCCACCACTTGGCTTGCAAGCATCGCCAGTGCTGAAGGCAGTTCAGTCACCGAAACAATTGCCACCTTCCAGTCAATTGCACCCTCATGCTCCCTATTCTCAGACACATACATCTGCAGTATTAGCACAGCAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAATTGCCCTTTAGTCAATCTGCACCTTCCCATGAGTCTCCTGGCTTAGGTGCACAGTTGCCGCTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGCAACACATACTCCTTTGGGTATGAACTTACAATCCCATGCTGCTGCTCCTAATCAACAGCAGCTTCCTACTCCAATTCATCCACGTCAAAATTCACCTTCTCAATTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTAGTTTTCAGTCTTCCCAGCAGGCATTCTCTCAGCTACAGCAGATGATACAGCCATCAAATCAAAATTCAACATTGCAGCCGAGTTCCCAGACCATTAAGCAGCAGTCTCACTGGGCAGGGGTTGTGCCACATACAACTGCCAGAGCTGCTTCTGCAACTTCAGATGCACATACATCTACAGTTCCTCCTGTAGCTATAAATACCCAAGCTGTAGCTCCTGTAAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACCGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTTTGGTGATCGAGCAACAACAAAAACCACCGGTACTCCAGCCTCATAACCAGCCACATCCTCAACTACTTTCTACCCCGCAACTCTCTCAAACTCCCCAAGCCCAGCTTCAAACTCAGTTCCAGACACAGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGCTTATACACAATTGCAGCCAGCCAATAGCTCAGTAAATGATCATACTCGCTTCCACCAGGAGATTGAAGTTCAACAGTGGGATCTACATGAAGATATTAGGCTCCTGCTGCCTTGA 2340 48.42 MPRCHRHAIVTTHYPQEDCTNLGIRFLTSAKLERHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHDTRRSPNNFRGGVTGANRRPFDSPPRYSTPAAAGFRPMGAGGGFRPIPGPGGGGFGSSFQPPPVAGQKRAYPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEFMGDRIPIDVRGFRPPVDAGIHPFGGQLPPRSSEMGPPLNLGGPASGFRGPNQGLLNPASSASQLNFNQSASQHPPLGLQASPVLKAVQSPKQLPPSSQLHPHAPYSQTHTSAVLAQQHNQPQNFNSSGQLPFSQSAPSHESPGLGAQLPLSQAMVQQGASSAAATHTPLGMNLQSHAAAPNQQQLPTPIHPRQNSPSQLAHMLSQQKQTLQASFQSSQQAFSQLQQMIQPSNQNSTLQPSSQTIKQQSHWAGVVPHTTARAASATSDAHTSTVPPVAINTQAVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELLVIEQQQKPPVLQPHNQPHPQLLSTPQLSQTPQAQLQTQFQTQMPHPQPLQQPSFHSQEGAYTQLQPANSSVNDHTRFHQEIEVQQWDLHEDIRLLLP 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23102767 23118562 - Lsi09G015060.1 Lsi09g01506 671119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01506 779 MobiDBLite consensus disorder prediction 453 471 - -
Lsi09g01506 779 Gene3D - 143 241 IPR012677 -
Lsi09g01506 779 SUPERFAMILY RNA-binding domain, RBD 246 351 IPR035979 GO:0003676
Lsi09g01506 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 248 311 IPR000504 GO:0003723
Lsi09g01506 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 220 IPR000504 GO:0003723
Lsi09g01506 779 SUPERFAMILY WW domain 652 685 IPR036020 GO:0005515
Lsi09g01506 779 MobiDBLite consensus disorder prediction 484 504 - -
Lsi09g01506 779 PANTHER FLOWERING TIME CONTROL PROTEIN FCA 101 713 - -
Lsi09g01506 779 MobiDBLite consensus disorder prediction 484 509 - -
Lsi09g01506 779 MobiDBLite consensus disorder prediction 691 736 - -
Lsi09g01506 779 MobiDBLite consensus disorder prediction 36 151 - -
Lsi09g01506 779 CDD RRM2_FCA 247 326 IPR034645 -
Lsi09g01506 779 Gene3D - 242 333 IPR012677 -
Lsi09g01506 779 SMART ww_5 648 680 IPR001202 GO:0005515
Lsi09g01506 779 SMART rrm1_1 247 322 IPR000504 GO:0003723
Lsi09g01506 779 SMART rrm1_1 156 232 IPR000504 GO:0003723
Lsi09g01506 779 Gene3D - 649 691 - -
Lsi09g01506 779 MobiDBLite consensus disorder prediction 325 354 - -
Lsi09g01506 779 Pfam WW domain 651 678 IPR001202 GO:0005515
Lsi09g01506 779 MobiDBLite consensus disorder prediction 380 422 - -
Lsi09g01506 779 MobiDBLite consensus disorder prediction 540 562 - -
Lsi09g01506 779 ProSiteProfiles WW/rsp5/WWP domain profile. 647 680 IPR001202 GO:0005515
Lsi09g01506 779 CDD WW 650 680 IPR001202 GO:0005515
Lsi09g01506 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 236 IPR000504 GO:0003723
Lsi09g01506 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 246 326 IPR000504 GO:0003723
Lsi09g01506 779 MobiDBLite consensus disorder prediction 451 471 - -
Lsi09g01506 779 SUPERFAMILY RNA-binding domain, RBD 136 240 IPR035979 GO:0003676
Lsi09g01506 779 PANTHER RNA BINDING PROTEIN 101 713 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01506 - - - cmax:111494860 1220.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02341 Lsi-Chr2:30038276 Lsi09g01506 Lsi-Chr9:23102767 6.33E-44 dispersed
Lsi03g01125 Lsi-Chr3:21474292 Lsi09g01506 Lsi-Chr9:23102767 1.01E-17 dispersed
Lsi04g01460 Lsi-Chr4:22344929 Lsi09g01506 Lsi-Chr9:23102767 2.41E-06 dispersed
Lsi09g01506 Lsi-Chr9:23102767 Lsi08g00587 Lsi-Chr8:14135174 9.25E-10 dispersed
Lsi09g01506 Lsi-Chr9:23102767 Lsi10g00060 Lsi-Chr10:992150 3.23E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37