Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01511 ATGTTCTTCACGGGCGATTCATCTACTCGTAAGCGAGTTGATTTAGGTGGCCGGAGTTCCAAGGAAAGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCCTTGAGACAGCAAAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGGGTGCAAGAGCAATTTCATGATACTTATGGAAAGCATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTATAATGCAAAACACACTGGTGATTTTTCAGTTCTTGTAGAGGCTTGCCGGTTACTTCGGCAATTTGTTCAAGACAATGGGGACATGCTGAGCATCTTTGCTGGCAAGGATTATTTATCTAACAAGGCCTCAGTGGATTACAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACATTATAATAGAAACCAATTGAGGAATCAACTTTTTGCTGCACCTGAGAACTCTAACACACCTGCGACTCTATTGTTAGACACAATTGTTTTCTTATTACAACCCGAACTCCCATGGGTTTGTAAACTTGTTGGCTACTTTCTGGAAAGAAATGCATATGTGTTGATTAGGGATATCACTTTGACGGGGAAGGAAAGTGCAGATTCACATCCCAAAAGTTCAGTGCCTTCTTTAGAACGTCTGCTTTCTCTTTTGAGTTCTCATGTTGGTGAGAAGCCATGCGGTTGCGCACGTGTTGATCCCAACTGGAGTTTCTCCTCCCAAATTCTTACTCTTCCTTTACTATGGGGGTTGATTGGACATTACATTCATCAGATGGCATCATGTGTTCAACATTATGCAAATGTACTCCCAAAGGATGTAACAGCTGACATTCCTGGCTATGCCTGCCTTCTTGGAAATGTATTGGAAATTTCCAGAACTGCTCTTTCTCAGCCTGACTGCTCATCCGAATTGGCAGTAGATCTTGCTTCCGTCACGACATTCTTGTTGGAACTACTTCCGTCGATGAAATCACCTCTTAAAGATATGAAAGAGAGTGCTGCATTGGGTGATGACGATGTGGTTGTGTCTGATCAAGAAATAGAGTTAGCATTGAATAAAGATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTCCTGCAGTTGGCAAATGCTTTATTTGGACAGATCTCACGAGTTAGTGGCCCATATGATGGTCCTGATGATAAAGAGGTCAAAGCTGTTGGTACAGCCTGTGCTTTTCTGCATGTCACTTTCAATACCCTACCTCTGGAGCAAATTATGACTGTTCTAGCATACAGAACGGAGTTAGTTCCAGTACTCTGGAGTTTTATAAAAAAGTGCCATGAGAATCAAAAATGGTCATCCTTTTCAGAGAAGTTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCCGTGTACAAGCACATGTTGACAATAATTGACAATGAGGAATTTTATGAGCAGGAGAAGCCACTATCATTAAAGGATATCAGATGCCTGATTATTATTTTAAGACAGGCCCTATGGCAGCTTTTATGGGTGAGTCCTACCGCTCCTAGTAATTCTGCAAAACATGCTGCTAGTGCCCATGGAACTAAGAGGCACACCGTTGAATTCGTTCAATACAGGGTTACAATTGTTGCCTCAGAGCTCCTGTCACAGTTGCAAGACTGGAACAATAGACGACAATTTACACCCCCCAGTGACTTCCATGCTGACGCCGTGAATGATTATTTCATTTCTCAGGCAGTGATAGAAAATACTAGAGCAAATGATATTCTCAAGCGAGCTCCCTTTTTAGTACCATTTACAAGCAGGGTTAAGATTTTCACTTCACAACTAGCAGCAGCAAGACAAAGGAATGGGTCTCATGCGGTTTTTGCCAGAAACCGTTTTAGAATTCGACGAAATCATATATTGGAAGATGCTTTTAATCAGATGAGTGCATTGTCTGAAGATGATCTTCGTGGATCGATACGTGTGTCGTTTGTTAATGAATTTGGAGTTGAGGAGGCAGGAATTGATGGTGGTGGTATTTTCAAAGATTTCATGGAGAACATTACACGGGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCATTTGCTTTACCCCAATCCTGGTTCGGGAATGATACATGAGCAACATCTCCAATTTTTTCATTTCCTCGGAGTTCTTTTGGCAAAGGCCATGTTCGAAGGAATTCTCGTTGATATACCTTTTGCAACATTCTTCTTGAGCAAGTTAAAACAGAAGTACAACTATCTGAATGACTTGCCATCCTTGGATCCTGAATTGTATCGCCACCTTATTTTCCTAAAGCATTTTGAAGGTGACATTTCTGAACTGGAGCTATATTTTGTTATTATAAACAATGAATATGGAGAGCAAACAGAAGAAGAGCTACTTCCTGGAGGAAAAAACCGTCGCGTCACCAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCATCGTTTGAACTTTCAGATACGGCAGCAAAGTTCTCATTTCTTGAGAGGGTTTCAGCAGCTTATACAGAAAGAATGGATCGATATGTTCAATGAGCATGAATTCCAGCTTTTGATATCAGGTTCACTGGACAGCATGGATGTTGATGACCTACGGACACATACTACTTATTCAAGTGGTTATCATAAAGAGCATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCAGTGGAAAACCAAAAGAAATTTCTGAAGGCTGCTGGTAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCGGCTACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGAGGAGGGAATAGATTGAGCATGGATCGGACTCTTGAAACCCATTTCTGGCCCTCGCGATTTAGTTTCAAAATGCGTAAAAAGAAGAAAAAAAAGAGAAAAAGGATTCAGCCAGGGATGGGATCTGCCAAGCCAGTGACTGAGATGGGTGTACGGATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCAGAAAATTGATAGGCATGCGATGCGCCAATGTCTATGATCTCTCACCCAAGACATACATGTTCAAGCTTATGAACAGTAGTGGAGTCACTGAATCGGGTGAGAGTGAGAAGGTGTTGCTGTTGATGGAAAGTGGAGTCAGATTGCATACAACTGAATATGTTCGAGACAAAAGCAATACTCCATCTGGGTTCACTCTCAAACTAAGAAAGCATATACGCACAAGAAGACTTGAGGATGTGCGGCAACTTGGATATGATAGGATAATCCTATTTCAGTTTGGGCTAGGTGATAGTGCACACTATGTTATCCTGGAGCTTTATGCTCAGGGGAATGAAAATAATGAAACAGATCCTCCAAAGCAACAGCCGGGTAACCAAAAAGTCTCAAAGCCTTCTGTCTCGAGTAAAGCCCAAGGTGATGGCAGTCGGTCCAAACAAACTACTTTGAAAGCTGTTCTTGGGGAGGCACTGGGATATGGAACTGCACTATCTGAGCACATTATATTAAATGCCGGTCTGATTCCAAATATGAAACTTTGTAATGATAATAAACTTGATGATAATAGTCTTCAGCTGTTAGTGCAAGCTGTTGCAAATTTTGAGGATTGGCTAGAGGATGTAATATTTGGTACTAGAGTTCCTGAAGGTTACATTTTGATGCAGAAGAAAGATGTTAAAAAAGAAGAATCTGATGCTGCAACTGCTAACGAGATCTATGATGAGTTCTGCCCAATTTTATTAAACCAATTCAAATCTAGAAAGTATACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAATTCTACAGTAAAATTGAGAGTCAAAGGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCGGCAACTCAGAAACTTAATAAAATACGTATGGATCAGGGAAATCGTGTAGAGTTATTAAAACAAGAAGTTGATCATTCTGTCAAAATGGCAGAATTAATTGAATACAATTTAGAAGATGTAGATGCTGTTATATTAGCAGTCCGTGTTGCTCTTGCTAAAGGCATGAGCTGGGAGCATCTTAAACGAATGGTGAAGGAAGAAAAGAAATCTGGAAATCCAGTGGCTGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGCAACAATCTTGATGAAATGGACGATGATGAAAAGACACAACCAGTTGATAAGGTAGAGGTGGATATATCACTTTCAGCTCATGCCAATGCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACAATTACTGCACATGAAAAAGCTTTTAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAACAGTTGCCACGATATCCCATATGCGCAAAGTTCATTGGTTCGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGTCGTGATGCTCAACAAAATGAGATGATAGTCAAACGTTACATGTCAAAGGGAGATCTGTATGTCCATGCTGAGTTGCATGGAGCTTCTAGCACTGTGATTAAGAATCACAAGCCCGAACAACTAGTGCCTCCGCTCACGCTGAACCAAGCAGGATGTTTTACGGTTTGTCACTGCCAGGCATGGGATTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGTAAAACTGCTCCTACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTCGAGGAAAGAAGAATTTTCTTCCTCCACATCCTCTTATCATGGGTTTTGGATTGTTATTTCGCTTGGATGAGAGCTCCTTAGGTTCACATTTAAATGAAAGGAGGGTAAGAGGTGAGGAGGATGGAGTGAATGACGTTGAAGAAAATGAACTTCTTAATGAAGAATCTGATACTGAATATGAGAAGAGGGAATCAGAAGAAGTATCCAATACATCTACAAATTCATCTAGACCAGTTATATCTGGACCTGAAGACACAGAATCACTTGAAATTCCCATTGAAGGTAGAATGACACTGAATGGTGTCAATAAGGATATCCAACCTGATGTTATAGATAATGTTTCCCTTGTCACCCCACAACTTGAGGATCTCATTGATAAAGCTCTTGAGCTTGGATCTGCGACTGCATCTAGCAAAAATTATATATTACAGACTTCTAAGGTTGATTCGGTGTATGAACCCCATCTAGATGATAAAAATGCTGCAGGGAGAGAGAAACCCTACATCTCAAAAGCTGAAAGAAGAAAACTTAAGAAAGGGCAGAATAGTAGTTCTACAGACAGCAGCATCAAGCAGGAAAGTGAACAATCTAGAGATATTGATGTTTCTCTGAATCATCCTCAAAACAAGGTTAATAATCCAAAGTCGGGTTCTGTGAAAATCAGCCGTGGTCAGAGGGGTAAACTCAAGAAAATGAAAGAAAAGTATGCTGATCAGGATGAAGAAGAAAGAAGCATCCGCATGGCTTTATTGGCTGTAAGCATTAATTTTTTAATCTCAAATGGTTGA 5631 40.61 MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRKASEAARFRVQEQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHTGDFSVLVEACRLLRQFVQDNGDMLSIFAGKDYLSNKASVDYRVKKFAYACIQTVHYNRNQLRNQLFAAPENSNTPATLLLDTIVFLLQPELPWVCKLVGYFLERNAYVLIRDITLTGKESADSHPKSSVPSLERLLSLLSSHVGEKPCGCARVDPNWSFSSQILTLPLLWGLIGHYIHQMASCVQHYANVLPKDVTADIPGYACLLGNVLEISRTALSQPDCSSELAVDLASVTTFLLELLPSMKSPLKDMKESAALGDDDVVVSDQEIELALNKDVEKQICDAIDPRFLLQLANALFGQISRVSGPYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWSFIKKCHENQKWSSFSEKLAYLSGDAPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRCLIIILRQALWQLLWVSPTAPSNSAKHAASAHGTKRHTVEFVQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRANDILKRAPFLVPFTSRVKIFTSQLAAARQRNGSHAVFARNRFRIRRNHILEDAFNQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGVLLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHFEGDISELELYFVIINNEYGEQTEEELLPGGKNRRVTSENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDSMDVDDLRTHTTYSSGYHKEHYVIEMFWEVIKSFSVENQKKFLKAAGNANEEALDRLPTSATCMNLLKLPPYRRGGNRLSMDRTLETHFWPSRFSFKMRKKKKKKRKRIQPGMGSAKPVTEMGVRMNTADVAAEVKCLRKLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGDSAHYVILELYAQGNENNETDPPKQQPGNQKVSKPSVSSKAQGDGSRSKQTTLKAVLGEALGYGTALSEHIILNAGLIPNMKLCNDNKLDDNSLQLLVQAVANFEDWLEDVIFGTRVPEGYILMQKKDVKKEESDAATANEIYDEFCPILLNQFKSRKYTKFETFDAALDEFYSKIESQRSEQQQKAKESSATQKLNKIRMDQGNRVELLKQEVDHSVKMAELIEYNLEDVDAVILAVRVALAKGMSWEHLKRMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMDDDEKTQPVDKVEVDISLSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPEQLVPPLTLNQAGCFTVCHCQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEDGVNDVEENELLNEESDTEYEKRESEEVSNTSTNSSRPVISGPEDTESLEIPIEGRMTLNGVNKDIQPDVIDNVSLVTPQLEDLIDKALELGSATASSKNYILQTSKVDSVYEPHLDDKNAAGREKPYISKAERRKLKKGQNSSSTDSSIKQESEQSRDIDVSLNHPQNKVNNPKSGSVKISRGQRGKLKKMKEKYADQDEEERSIRMALLAVSINFLISNG 1876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23198554 23223172 + Lsi09G015110.1 Lsi09g01511 671124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01511 1876 Gene3D Hect, E3 ligase catalytic domains 660 898 - -
Lsi09g01511 1876 MobiDBLite consensus disorder prediction 1151 1185 - -
Lsi09g01511 1876 Gene3D Hect, E3 ligase catalytic domain 902 952 - -
Lsi09g01511 1876 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Lsi09g01511 1876 CDD HECTc 658 973 IPR000569 GO:0004842
Lsi09g01511 1876 SMART hect_3 677 998 IPR000569 GO:0004842
Lsi09g01511 1876 MobiDBLite consensus disorder prediction 1815 1834 - -
Lsi09g01511 1876 PANTHER BNAC01G43970D PROTEIN 946 974 - -
Lsi09g01511 1876 PANTHER BNAC01G43970D PROTEIN 1 946 - -
Lsi09g01511 1876 Pfam NFACT protein RNA binding domain 1505 1616 IPR008532 -
Lsi09g01511 1876 MobiDBLite consensus disorder prediction 1788 1856 - -
Lsi09g01511 1876 MobiDBLite consensus disorder prediction 1647 1703 - -
Lsi09g01511 1876 Pfam HECT-domain (ubiquitin-transferase) 715 945 IPR000569 GO:0004842
Lsi09g01511 1876 Gene3D Hect, E3 ligase catalytic domain 784 863 - -
Lsi09g01511 1876 MobiDBLite consensus disorder prediction 1 26 - -
Lsi09g01511 1876 Pfam NFACT N-terminal and middle domains 1031 1147 - -
Lsi09g01511 1876 Pfam NFACT N-terminal and middle domains 1161 1495 - -
Lsi09g01511 1876 ProSiteProfiles HECT domain profile. 679 973 IPR000569 GO:0004842
Lsi09g01511 1876 SUPERFAMILY Hect, E3 ligase catalytic domain 654 974 IPR035983 GO:0004842
Lsi09g01511 1876 MobiDBLite consensus disorder prediction 11 26 - -
Lsi09g01511 1876 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 946 974 IPR044611 GO:0000209|GO:0061630
Lsi09g01511 1876 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 946 IPR044611 GO:0000209|GO:0061630
Lsi09g01511 1876 Gene3D ibrinogen binding protein from staphylococcus aureus domain 1027 1151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01511 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - csv:101218340 1871.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01011 Lsi-Chr8:18647976 Lsi09g01511 Lsi-Chr9:23198554 1.20E-49 dispersed
Lsi09g01511 Lsi-Chr9:23198554 Lsi03g01956 Lsi-Chr3:30959868 2.38E-54 dispersed
Lsi09g01511 Lsi-Chr9:23198554 Lsi03g02055 Lsi-Chr3:31865008 9.00E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
Vvi5g212 . . . . . . . Bma05g01011 . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . Bpe05g00809 . . . . . . . . . . Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01511 . . Cme11g02101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31