Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01515 ATGGTAGCTGGAGCTGAGATCAAATGCCCCAAAACCGTTTCTCTGATGAAAATCAACTATCATCTTCGCGTAACCGATGATCGCGATCTTCAGATCGATTTGACGCACCCTTCTTCCTCACCTGTCTTTGCCGAGCTTGGTATCCTTCTGAAAAGGTGGAAGACAGCCTCACAGAGTGGTGGTCATCCGGCTAGTGGTTCAAGGAATATGGATAAAGCTAAAATCCTGTGGTCCAATGTGGCAGTTAGTTCAGATATCGTTGAAGATGTGCATATAAAATCAACTGCCATAGATTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATTGATGATCTGTCTGCCCACCTCAGATCTATGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCACGCAGCTGCTTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCCGACTGGCTAAAAATGCAGGACATTGATTCTATTTCTTTGAAAGATTTGGAGAGCTCTCATCGCAAAGCATTTCAACTGGCAGATCTTGCCTTGGCTGATGAGCAAAGTGTTAGCAGCTCGTGTGGGACAACTGCATTAACCGCGTTGGTTCTTGGGAAGCATTTGCTTGTTGCAAATGCCGGTGACTGCCGAGCAGTCTTATGTAGGAAAGGTGTAGCAGTCCCAATGTCTCAAGATCACAGGCCTTCTAATTTACTCGAGCTCAGGCGAGTGGAAGGGATGGGTGGTTTTGTTGATGATGGGTATGTTAATGGCTATATTTCAGTGACCAGGACCTTGGGGGATTGGGACCTGAAATTACCAAATGGCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATTTTAACAAACGATGACGAGTTCTTGATTCTCGGCTGTGACGGTATTTGGGACGTTATGTCAAGCCAATATGCTGTCAGTCTTGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCGAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCGGATAATCTTACTGCAATTGTAATCTGCTTTTCTTCTCCCAACTGCGTTCCTCAGCAGCGAATATGCAAGTCGTGTAATCTGACAGAAGAGGCTACAAGTAGATTGAGGAGCTTGTTAGAAGGTAACTGA 1221 45.21 MVAGAEIKCPKTVSLMKINYHLRVTDDRDLQIDLTHPSSSPVFAELGILLKRWKTASQSGGHPASGSRNMDKAKILWSNVAVSSDIVEDVHIKSTAIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSMFKCSMPNGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKMQDIDSISLKDLESSHRKAFQLADLALADEQSVSSSCGTTALTALVLGKHLLVANAGDCRAVLCRKGVAVPMSQDHRPSNLLELRRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNGSSSPLIAEPQVEHVILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSRELVQEALRLNTSDNLTAIVICFSSPNCVPQQRICKSCNLTEEATSRLRSLLEGN 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23255055 23261200 - Lsi09G015150.1 Lsi09g01515 671128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01515 406 ProSiteProfiles PPM-type phosphatase domain profile. 104 374 IPR001932 -
Lsi09g01515 406 PANTHER PROTEIN PHOSPHATASE 2C 79 387 IPR015655 GO:0004722|GO:0006470
Lsi09g01515 406 SUPERFAMILY PP2C-like 93 376 IPR036457 -
Lsi09g01515 406 ProSitePatterns PPM-type phosphatase domain signature. 143 151 IPR000222 GO:0043169
Lsi09g01515 406 Pfam Protein phosphatase 2C 112 366 IPR001932 -
Lsi09g01515 406 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 79 387 - -
Lsi09g01515 406 SMART PP2C_4 94 372 IPR001932 -
Lsi09g01515 406 Gene3D - 86 378 IPR036457 -
Lsi09g01515 406 CDD PP2Cc 103 374 IPR001932 -
Lsi09g01515 406 SMART PP2C_SIG_2 119 374 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02507 Lsi-Chr2:31530512 Lsi09g01515 Lsi-Chr9:23255055 1.11E-49 dispersed
Lsi09g01515 Lsi-Chr9:23255055 Lsi11g00389 Lsi-Chr11:4007795 1.07E-83 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25955 PF00481 PP2C 9.00E-65 CL0238 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01515 K14803 - csv:101207477 669.463