Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01533 ATGTGGGAGGCCCCCTTGGTAGTGTGGACATTTTTCATTCTTACATTGTTGTCCATTACTTTGCTTTCAAAAATACTTAGAAACCAAAAGTACAGTGGCCAAGAAAGTCAGAGGAGATACAAATTTCCACCAGGGACAAGAAGCTGGCCTGTTATAGGTGATAGCTTCAATTGGTACTCTGCCATTGCAAGTTCTCATCCTTCCAAGTATGTTGAAGAACAAGCCAAAAGATACGGGAAGATCTTCTCGTGTCATGTTTTTGGAAAATGTACAGTAGTATCAACCGATCCAGAATTTAATAGATATGTGATGCAAAACGAAGGGACGTTGTTTCAATCAAGCTATCCCAAATCTTTCAGAGATTTGGTAGGCATCAATGGTGTCATCACAGTCCAAGGGGAACAACAAAGGAAACTCCACGCCATTGCTTCCAATTTTATGCGTATAAACAAACTCAACTTTAGCTTCCTAAAAGATATTCAAACCATAATCATCCATTCCTTGACCACTTTCCATGACGGACATCAAGTCATATCTCTCCAAGATGCTTGCAGAAAGATTGCAATTAATCTAATGGTAAGTCAGCTATTGGGTGTGTCAAGTGAATCAGAAGTCAATGAAATTAGTCAGTTATTTTACGACTTCGTCGATGGTTGTCTATCTATTCCTATCAACTTACCTGGCTTTGCCTATTACTCCGCCATGAAGGCAAGGAAGCAAATCATAAGCAAAATTAAGAAGAAAATAAAGATGCACAAATCAGGCGTGGCAATGGAAACGAGCGGGCAAGAAGTGCTTGCAAGACTATTGGAGGAACAAAAGTACTTATCAGATGAGGCAGTTGAAGATTTCATAATCAATCTTCTTTTTGCTGGAAACGAAACCACTTCTAAAACAATGCTTTTCGCAGTCTATTACCTAACCCACTCACCTAAAGCAATGAAGCAACTTGTGGATGAACAAGATGCTTTAAGAAATAAGTATGGAGATAATACAATCACATGGCAGGATTACAAATCAATGTCCTTTACCCAGTGTGAAATGAGAAATTGGAGGAATAGCCCATTCTTTGCTCCATTCGGAGGAGGTGCTAGATTGTGTCCGGGAGCAGAATTGGCCCGTCTCCAAATTGCTTTATTTCTCCACCACCTTGTTACTAAGTACAGGTGA 1170 39.83 MWEAPLVVWTFFILTLLSITLLSKILRNQKYSGQESQRRYKFPPGTRSWPVIGDSFNWYSAIASSHPSKYVEEQAKRYGKIFSCHVFGKCTVVSTDPEFNRYVMQNEGTLFQSSYPKSFRDLVGINGVITVQGEQQRKLHAIASNFMRINKLNFSFLKDIQTIIIHSLTTFHDGHQVISLQDACRKIAINLMVSQLLGVSSESEVNEISQLFYDFVDGCLSIPINLPGFAYYSAMKARKQIISKIKKKIKMHKSGVAMETSGQEVLARLLEEQKYLSDEAVEDFIINLLFAGNETTSKTMLFAVYYLTHSPKAMKQLVDEQDALRNKYGDNTITWQDYKSMSFTQCEMRNWRNSPFFAPFGGGARLCPGAELARLQIALFLHHLVTKYR 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23449532 23462079 - Lsi09G015330.1 Lsi09g01533 671146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01533 389 Pfam Cytochrome P450 352 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 Pfam Cytochrome P450 43 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 Gene3D Cytochrome P450 32 348 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 SUPERFAMILY Cytochrome P450 37 389 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 360 369 IPR017972 GO:0005506|GO:0016705
Lsi09g01533 389 PRINTS E-class P450 group I signature 280 297 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PRINTS E-class P450 group I signature 300 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PRINTS E-class P450 group I signature 367 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PRINTS E-class P450 group I signature 357 367 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PANTHER CYTOCHROME P450 SUPERFAMILY PROTEIN 17 348 - -
Lsi09g01533 389 PANTHER CYTOCHROME P450 SUPERFAMILY PROTEIN 351 387 - -
Lsi09g01533 389 Gene3D Cytochrome P450 349 389 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PANTHER CYTOCHROME P450 26 17 348 - -
Lsi09g01533 389 PANTHER CYTOCHROME P450 26 351 387 - -
Lsi09g01533 389 PRINTS P450 superfamily signature 291 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PRINTS P450 superfamily signature 358 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01533 389 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01533 Lsi-Chr9:23449532 Lsi07g00205 Lsi-Chr7:2230672 3.22E-08 dispersed
Lsi09g01533 Lsi-Chr9:23449532 Lsi02g02944 Lsi-Chr2:35584038 7.49E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01533 - - csv:101205087 547.74