Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01558 ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCGTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGCAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGACTAGTTGCCAGTGAGCCGGTGAAACGCAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCTTCTGCTGTAAATCCAGCCGCTGTAGCTTCTTCCCCGAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAAATGGCTTCTCTTTGCGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCCAAAATTATGTCATTTTCCCAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCCGTTTCCACTGTTACTCTTCGTCAGCCTTCGACTTCCGGAGGCACGGTCACATATGAGATAATATGTCTGTCGGGCTCATACTCTCTTGGAGAAATTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTTTCCCTTGCTAGCCCTGATGGGCGTGTTATCGGCGGTGGAGTAGGAGGAGCACTTATCGCAGCAACCCCAGTTCAGGTGATAGTAGGGAGTTTCATGTGGGGCAGTTCGAAGTCGAAGTACAAGAAGAGGGAATCTGTTGAAGGCGTGATCGACTCTGATCATCAGTCGGTAGATCATGCAGTTGCAATTGCGAACGTGCAGCAGAATCAGAATCTGACTCCGACATCCTCAGTTAGTATGTGGCCATCCTCACAGTCTCTGGACATGCGCAATGCCCACATCGACATCGATCTGATGCGCGGTTGA 993 51.56 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGLVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPAAVASSPKRGRGRPPGSGKKQQMASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEIICLSGSYSLGEIAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKRESVEGVIDSDHQSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23699625 23705754 - Lsi09G015580.1 Lsi09g01558 671171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01558 330 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Lsi09g01558 330 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Lsi09g01558 330 CDD DUF296 150 260 IPR005175 -
Lsi09g01558 330 MobiDBLite consensus disorder prediction 11 52 - -
Lsi09g01558 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 260 IPR005175 -
Lsi09g01558 330 MobiDBLite consensus disorder prediction 98 112 - -
Lsi09g01558 330 ProSiteProfiles PPC domain profile profile. 145 282 IPR005175 -
Lsi09g01558 330 MobiDBLite consensus disorder prediction 1 135 - -
Lsi09g01558 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 321 - -
Lsi09g01558 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 271 - -
Lsi09g01558 330 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Lsi09g01558 330 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Lsi09g01558 330 Gene3D - 151 281 - -
Lsi09g01558 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 321 IPR039605 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01558 Lsi-Chr9:23699625 Lsi11g00064 Lsi-Chr11:740003 1.21E-53 dispersed
Lsi04g02421 Lsi-Chr4:31318792 Lsi09g01558 Lsi-Chr9:23699625 1.34E-63 transposed
Lsi08g00770 Lsi-Chr8:16089755 Lsi09g01558 Lsi-Chr9:23699625 3.68E-64 transposed
Lsi10g01197 Lsi-Chr10:16251842 Lsi09g01558 Lsi-Chr9:23699625 4.62E-09 transposed
Lsi09g00265 Lsi-Chr9:2791224 Lsi09g01558 Lsi-Chr9:23699625 5.36E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01558 - - csv:101203138 580.482