Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01569 ATGGCGGGTAGCAGTGGAGAAGATGTGGTTTATGTGGCTGTGGGAAATGATATAAAGGAGTGTAAATTGAATTTGGTCTATGCTATAAAGCACTCAGGTGGGAGGAGGATTTGCATCCTTCATGTTCATGAGCCAGCAAAGTGGATTCCAATCTTGGGAACAAAATTTTTGGCAAGTTCTATGAAAGAAGAAGAAGTAAATGCATACCGCAAACTTGAGAGGCAGGATGCAAATAAGATTCTTGATGGTTTCCTTCTCCTCTGTCACCAAGCTGGGGCTCAGGCAGAGAAACTTTATTTTGAATCTGACAAAATTAAGAAGGGAATTGTCGAACTCGTCTCCCTTTATGGAATTAGAAGGCTTATTATGGGTGCAGCAGCGGACAAGTATCACTCAAGAAAAATGACAAAAATCAGGTCGAGGAAAGCTATGTATGTTCACCTGAATGCACCAGCTTTCTGTCAAATTCAATTTGTTTGCAACGGGCTGTTAATTCGCATTAGGGAAGCTTGTCCACAAGAAGCTCATGCAAATATCTCACCACCATCACCTCAGTCACAGAACATCAACGAGGCAAATTGGAGACCAGTGCAGTCTGGCCAATTTAATGGGAGAATAGTAGACAGTCCATCAATTGTTATGGAAAGACTTACGATTTCAGAGAGCATTTCAAATGCTAGTGGGACTTGGAGCGCTTTTGAGCGTTCATATTCAACAAGTTCTTCTAGTGGGTGTATGGATGTTGCATCTTCAAGGACTGAGGAAGATGCATATGAACTAGGATTAAATTCTCCTCCTCTGTTGACAAATTTTGCTCCTAACTCCTCTCCTCCCCATTTATTGGGATTCCAGCAAGATGGAAGTGCTGATGATAGTCTTTATATTCAACTTGAAAAGGCGATAACCGATGCAGCAAATGCCAGGCGAGAAGCCTTTAGAGAGGCATTGAAGCGAGCGATGGCTGAAAAAGAACTTGGCGATGCTATTCGCAGGGCTAAAGTTTCTGAAGCCTTGTATGCTGAAGAGTTTAGAGGACGGAAGGAAACTGAAGAAGCGCGGTCAAAAGATAGAGAAGAACTTGACAATGTGAAGAACCTAGTACATGAAATGAAGGAGGAGCTCCAAATCGCCCGAAACAAGGGATTAAAACTAGAGAACCAAATTGCAGAGTCTGATGAGATGGTGAAGGAGTTGGAGCAGAAGATCCTCTCAGCCATAGAACTACTGCATAATTACAAAAATGATCGAGATGCATTGCTGAAGCAACGAGATGATGCACTCAAAGAATTGGATGACATAAGGACAAGACAAGTAGACGCCAGAATTCAACATAATGCTCAATTATTCTCTGAGTTCTCATTCTCCGAAATTGCAGAAGCGACCCGGAAATTCGATCCCTCTCTTAAGATTGTAGAGGGTACACATGGAAGCATGTATAAAGGTCTGCTGTATAACACTGAGGTTTCCATAAAAATGCTCTGTTCTCATAACTTGCAGAACCCAGTAGAGTTTCAACGTGAGGTTGATGTATTGAGTAAGCTGAGACATCCCAACATTGCCACGCTCATTGGGGTCTGTCCAGAGGCTTGTATTCTTGTTTATGACTATTTTCCGAATGGAAGTTTAGAAGATAGGCTAGCCTGCAAGGACAATTCTTCTCCATTATCCTGGAAAACTCGGATACGTATCGCTACAGAGTTATGCTCCGCTCTTATATTTATTCATTCGAATAAAATTTGCAAGATCATTCATGGTGACATGAAGCCTTCAAATGTACTATTAGATGCAAATTACGTTCCCAAACTTGCTGGATTTGGAACTTGTAATTTTTTGCCTCATGATGAAAAGTCGAGTTACAATGAGAAGGGCAATCATGAATTCCCTCTCACAACAAAGTTGGACGTTTTTTCATTTGGCATGGTATTGTTAAGTTTGTTAACTGGACAATCATACTTGAGATTGAAAGAAGACGTCCAGTTCGCCATAGAGGAACGAAAATTGAAAGATATTTTGGATCCACGAGCAGGGGACTGGCCATTCGTGCAGGCTGAACAGTTGGCCCAGTTGGCATTGAGGTGTTGCAATACAAATAGTATGTACAGGCCAGACCTTGTGTCTGATGTGTGGAGAGTACTTGAGCCAATGAGGGCTTCTTGTGGAGGTTCACTATCAGTATGCCTAACCTTTGGGGACCAGCAAGTGCAACCTCCTCCTTATTTCATATGCCCTATTTTTCAGGAAGTCATGGAGGATCCTCATGTAGCAGCCGACGGGTTTACCTACGAGGCGGAGGCTTTGAGAGGATGGTTAGACAGTGGACACGACACTTCACCAATGACGAACCTAAGGCTCGATCACCAAAACCTCGTCCCTAACCGTGCTCTTCGTTCGGTAATCCAAGAATGGTTGCAACAGCACCAGTAA 2424 42.78 MAGSSGEDVVYVAVGNDIKECKLNLVYAIKHSGGRRICILHVHEPAKWIPILGTKFLASSMKEEEVNAYRKLERQDANKILDGFLLLCHQAGAQAEKLYFESDKIKKGIVELVSLYGIRRLIMGAAADKYHSRKMTKIRSRKAMYVHLNAPAFCQIQFVCNGLLIRIREACPQEAHANISPPSPQSQNINEANWRPVQSGQFNGRIVDSPSIVMERLTISESISNASGTWSAFERSYSTSSSSGCMDVASSRTEEDAYELGLNSPPLLTNFAPNSSPPHLLGFQQDGSADDSLYIQLEKAITDAANARREAFREALKRAMAEKELGDAIRRAKVSEALYAEEFRGRKETEEARSKDREELDNVKNLVHEMKEELQIARNKGLKLENQIAESDEMVKELEQKILSAIELLHNYKNDRDALLKQRDDALKELDDIRTRQVDARIQHNAQLFSEFSFSEIAEATRKFDPSLKIVEGTHGSMYKGLLYNTEVSIKMLCSHNLQNPVEFQREVDVLSKLRHPNIATLIGVCPEACILVYDYFPNGSLEDRLACKDNSSPLSWKTRIRIATELCSALIFIHSNKICKIIHGDMKPSNVLLDANYVPKLAGFGTCNFLPHDEKSSYNEKGNHEFPLTTKLDVFSFGMVLLSLLTGQSYLRLKEDVQFAIEERKLKDILDPRAGDWPFVQAEQLAQLALRCCNTNSMYRPDLVSDVWRVLEPMRASCGGSLSVCLTFGDQQVQPPPYFICPIFQEVMEDPHVAADGFTYEAEALRGWLDSGHDTSPMTNLRLDHQNLVPNRALRSVIQEWLQQHQ 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23802565 23808789 + Lsi09G015690.1 Lsi09g01569 671182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01569 807 Pfam U-box domain 737 807 IPR003613 GO:0004842|GO:0016567
Lsi09g01569 807 SUPERFAMILY RING/U-box 731 806 - -
Lsi09g01569 807 CDD STK_N 9 162 - -
Lsi09g01569 807 SUPERFAMILY Protein kinase-like (PK-like) 447 710 IPR011009 -
Lsi09g01569 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Lsi09g01569 807 PANTHER OS02G0152300 PROTEIN 7 802 - -
Lsi09g01569 807 Pfam Protein kinase domain 469 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01569 807 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 33 7 802 - -
Lsi09g01569 807 ProSiteProfiles U-box domain profile. 735 807 IPR003613 GO:0004842|GO:0016567
Lsi09g01569 807 ProSiteProfiles Protein kinase domain profile. 464 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01569 807 Coils Coil 346 436 - -
Lsi09g01569 807 CDD RING-Ubox_WDSUB1_like 740 781 - -
Lsi09g01569 807 Gene3D Phosphorylase Kinase; domain 1 434 536 - -
Lsi09g01569 807 Gene3D Transferase(Phosphotransferase) domain 1 538 714 - -
Lsi09g01569 807 SMART serkin_6 464 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01569 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 734 807 IPR013083 -
Lsi09g01569 807 Coils Coil 302 322 - -
Lsi09g01569 807 SMART Ubox_2 739 802 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g02044 Lsi09g01569 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00816 Lsi-Chr1:6457124 Lsi09g01569 Lsi-Chr9:23802565 7.18E-81 dispersed
Lsi05g01216 Lsi-Chr5:20026351 Lsi09g01569 Lsi-Chr9:23802565 1.21E-13 dispersed
Lsi09g01569 Lsi-Chr9:23802565 Lsi10g01375 Lsi-Chr10:17894271 2.86E-132 dispersed
Lsi05g02044 Lsi-Chr5:27399888 Lsi09g01569 Lsi-Chr9:23802565 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83919 PF00069 Pkinase 2.00E-27 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01569 - - csv:101202751 1399.8