Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01572 ATGGACGTGGGATTCGCGTTAGTTATAGTAACGGCAGTTACGGCGTATCTTCTTTGGTTTACTTTCATTTCACGGTCGTTAAAAGGTCCTCAAATGTGGCCGTTGCTCGGCAGCCTCCCTGGCTTGATCGAAAATTGCGACCGTTTACATGACTGGATCTCCGACAACCTCCGCGCGTGTGGCGGCACGTATCAAACCTGCATCTGGGCTTTCCCTTTCTTCGCTAAAAAGCAAGGCCTCGTGACTGTCACGTGTGACCCGAAAAATCTCGAGCATATTCTCAAGACCCGATTCGATAATTACCCTAAAGGCCCCACTTGGCAAGCTGTTTTTCACGAGTTACTTGGACAAGGCATTTTTAACTCCGACGGTGACACGTGGCTTTTCCAGAGAAAAACTGCTGCTTTGGAATTTACTACTAGGACCCTTCGTCAAGCCATGGCTCGATGGGTTAGCCGAGCTATTAAGTTGAGGTTTTGTCCTATTCTTAAACAAGCCGAGCTGAATTCTGAACCGATTGATCTTCAGGATGTGTTGTTACGTCTTACTTTTGATAATATTTGTGGCTTGGCTTTTGGTAAAGATCCGATGACTTGCGCGCCGGGTTTCCCTGAAAATGGCTTTGCTATGGCTTTCGATCGAGCCACCGAGGCTTCATTGCAACGGTTTATTCTACCGGAAGTGCTTTGGAAATTCAAAAAGTGGCTTCGGCTTGGAATGGAAGTCAGCTTGAGCCGGAGCCTAGTTCATATTGAGGAGTATTTATCCAGTGTGATTGATTCACGTAAGCTCGAGTTGCTAAATCAGCCTAAAGACTCCACCCCACATGATGATTTATTGTCACGTTTCATGAAGAAAAAGGAAGGTAATTACTCTAACGCGTTCCTTCGCCACGTGGCGCTTAATTTCATCTTAGCTGGACGGGACACGTCATCCGTTGCGCTGAGCTGGTTCTTCTGGTTGGTAACATTAAACCCACTCATTGAAGAAAAAATCCTCCGCGAGATCTGCACCGTTCTGATTGAGACACGTGGAAATAACATCCAATCATGGCTCGAGGAGCCGTTAGGATTCGAAGAGATCGACCGTCTGATTTATCTCAAAGCCGCTCTCACCGAAACCCTAAGATTGTACCCATCAGTGCCGGAGGATTCAAAGCACGTCGTCGCCGACGACGTTCTTCCGGACGGAACCTTCGTTCCGGCGGGATCGTCAGTGACTTATTCGATCTATTCCACCGGAAGAATGAAGTCGACGTGGGGAGAAGACTGCCTCGAATTCCGGCCGGAGCGGTGGTTGACGGCGGACGGAAAGAAATTCATACCGTACGATTCGTACAAATTCGTAGCGTTCAATGCAGGGCCGAGGATCTGCTTAGGGAAGGATTTGGCGTATTTACAGATGAAGTCGATAGCGGCAGCGTTGCTACTCCGGCACCGGCTGACGGTGGCAGCAGGGCATAAGGTGGAGCAAAAAATGTCGTTGACGCTGTTTATGAAGTATGGGCTGAAGGTGAACGTTCACCGGAGGGACTTGGAAGGAATTGTGGAAAGTATCAGGGGCAAATACGGAAATTCGGAAGGGAAAGATGTTCCGTTAGTCGCCGTTGTGAACTGTAACGGCGGGTGTAACGGATTTAACGAAGTACCATGCTAA 1656 48.55 MDVGFALVIVTAVTAYLLWFTFISRSLKGPQMWPLLGSLPGLIENCDRLHDWISDNLRACGGTYQTCIWAFPFFAKKQGLVTVTCDPKNLEHILKTRFDNYPKGPTWQAVFHELLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVSRAIKLRFCPILKQAELNSEPIDLQDVLLRLTFDNICGLAFGKDPMTCAPGFPENGFAMAFDRATEASLQRFILPEVLWKFKKWLRLGMEVSLSRSLVHIEEYLSSVIDSRKLELLNQPKDSTPHDDLLSRFMKKKEGNYSNAFLRHVALNFILAGRDTSSVALSWFFWLVTLNPLIEEKILREICTVLIETRGNNIQSWLEEPLGFEEIDRLIYLKAALTETLRLYPSVPEDSKHVVADDVLPDGTFVPAGSSVTYSIYSTGRMKSTWGEDCLEFRPERWLTADGKKFIPYDSYKFVAFNAGPRICLGKDLAYLQMKSIAAALLLRHRLTVAAGHKVEQKMSLTLFMKYGLKVNVHRRDLEGIVESIRGKYGNSEGKDVPLVAVVNCNGGCNGFNEVPC 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23852959 23854614 - Lsi09G015720.1 Lsi09g01572 671185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01572 551 PANTHER CYTOCHROME P450 7 523 - -
Lsi09g01572 551 PANTHER CYTOCHROME P450 86A2 7 523 - -
Lsi09g01572 551 SUPERFAMILY Cytochrome P450 21 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 Gene3D Cytochrome P450 24 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Lsi09g01572 551 Pfam Cytochrome P450 28 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01572 551 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01298 Lsi-Chr2:17334962 Lsi09g01572 Lsi-Chr9:23852959 0 dispersed
Lsi09g01572 Lsi-Chr9:23852959 Lsi01g01063 Lsi-Chr1:8827607 4.58E-106 dispersed
Lsi09g00245 Lsi-Chr9:2581643 Lsi09g01572 Lsi-Chr9:23852959 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01572 K15398 - csv:101221526 1079.32