Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01583 ATGGCTTCTCTTCATAGAAAGCAAGCTAACTATGCCTGCTTTCTTCTCCTCTTCCTCTCTCTCCCATCTCCTTCCCTCTCCGTCTCTGAAGCCGAAGCTTCCTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACATGATCAACTCCCAGACGACTACAAATACCAACTTGACATTGCTGACACTTTTCCACATGAAAGGTTGAAGAAGGCTTATGTTGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGATCCCCAGAACATTACTGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTTGACGACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCGCCGGAAATTGGGCTCATGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCGTCCCTTCCAGCTTCTCCAAGCTCGTTCTCATGTTTGAGTTCGATATCAGCAACAACCGCTTCGTCGGCCATTTCCCTCTGGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACTAAGGAGTTCGATGCCATCTTCTTAAACAACAACAGATTCACCTCCTTAATTCCAGACACCATTGGAAACTCAACCGTCTCTGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCTAGCACCATCGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGAAACAAGCTCGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTCACAGTCTTCGATGCTAGTGGCAATGGCTTCATCGGCCAGTTGCCGGAATCCATCTCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGTAACAATGCATTGAGGGGCTCTGTTTCTGGAGGACTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAACTATTTTGATGGGAAAGATGCAGCGTGTGTTGCATCTAAAGAATCGGAGAAACTCATTGATGATGTTCAAAATTGTTTGGCAAATCGACCGGAGCAGAGAGATGCAAACAAATGTAGCATTGTCCTCAAGAAATCAGTAGACTGTGGAAACTGCGGGGGTGGGTCAAGTTCTCCCGGGGTGCCAATGACTCCTGAGGATCCATCTGATCAGTCTCCATCGCCCAGATATAGGTCCCCACCACCTCCGGTGAGCTCTCCACCAGAAACGATTGACACCTCTGTTCCAGAAGTGGGGACTCCAGGGGGTGGGAGTGAGACATCCGTTCCGTCCTCACCACCTACTGATGACACTCCTAGTCCATCTCCGGTTGAATCTCCCGCACCACCAGTTCACTCACCACCACCCCCCGTTCACTCACCACCACCCCCCGTCCATTCACCACCACCACCGGTTCACTCTCCACCCCCACCAGTCCACTCACCACCACCACCTGTCCACTCTCCACCCCCACCGGTCCATTCTCCACCGCCACCTGTCTACTCCCCACCACCTCCCGTCCATTCTCCACCACCACCAGTGAACTCTCCGCCGCCACCTGTTCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCCGGTTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCACCAAATATCGGCTTCGAATACGCATCACCACCTCCACCACTGTTTCCTGGCTACTGA 1764 51.19 MASLHRKQANYACFLLLFLSLPSPSLSVSEAEASYLTRRQLLALKEHDQLPDDYKYQLDIADTFPHERLKKAYVALQAWKLAIYSDPQNITANWVGADVCSYTGVFCAPALDDPNIEVVAGIDLNHGDIAGYLPPEIGLMTDLALFHINSNRFCGIVPSSFSKLVLMFEFDISNNRFVGHFPLVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASGNGFIGQLPESISGLQNLEIMDVSNNALRGSVSGGLCKLPKLANFTFSFNYFDGKDAACVASKESEKLIDDVQNCLANRPEQRDANKCSIVLKKSVDCGNCGGGSSSPGVPMTPEDPSDQSPSPRYRSPPPPVSSPPETIDTSVPEVGTPGGGSETSVPSSPPTDDTPSPSPVESPAPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVNSPPPPVQSPPPPTASPPPPPGSSPPPSFEDVILPPNIGFEYASPPPPLFPGY 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23966231 23967994 - Lsi09G015830.1 Lsi09g01583 671196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01583 587 MobiDBLite consensus disorder prediction 454 566 - -
Lsi09g01583 587 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 582 - -
Lsi09g01583 587 Pfam Leucine rich repeat N-terminal domain 74 107 IPR013210 -
Lsi09g01583 587 MobiDBLite consensus disorder prediction 394 587 - -
Lsi09g01583 587 MobiDBLite consensus disorder prediction 406 429 - -
Lsi09g01583 587 Gene3D Ribonuclease Inhibitor 234 357 IPR032675 -
Lsi09g01583 587 Gene3D Ribonuclease Inhibitor 73 233 IPR032675 -
Lsi09g01583 587 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 12 582 - -
Lsi09g01583 587 SUPERFAMILY L domain-like 81 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01583 - - - bhj:120092879 739.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01602 Lsi-Chr4:23544642 Lsi09g01583 Lsi-Chr9:23966231 1.87E-140 dispersed
Lsi09g01583 Lsi-Chr9:23966231 Lsi11g00270 Lsi-Chr11:2740543 8.25E-137 dispersed
Lsi09g01583 Lsi-Chr9:23966231 Lsi09g01584 Lsi-Chr9:23970908 1.25E-07 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01631 . 33 364 Leucine-rich Repeat extension Gene Families AT1G62440 59.2 8.6e-48 189.1
Lsi04g01602 . 45 291 Leucine-rich Repeat extension Gene Families AT1G62440 59.9 3.0e-45 180.6
Lsi11g01698 . 64 393 Leucine-rich Repeat extension Gene Families AT1G62440 58.8 3.4e-44 177.2
Lsi11g00270 CCT 40 391 Leucine-rich Repeat extension Gene Families AT1G62440 61.3 4.1e-42 170.2
Lsi06g00890 CCT 53 225 Leucine-rich Repeat extension Gene Families AT1G62440 69.4 3.5e-41 167.2
Lsi11g00270 CCT 5 391 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 3.6e-67 253.4
Lsi06g00890 CCT 4 397 Leucine-rich Repeat extension Gene Families AT4G13340 73.2 4.0e-66 250.0
Lsi05g01631 . 33 366 Leucine-rich Repeat extension Gene Families AT4G13340 66.6 3.8e-53 206.8
Lsi04g01602 . 24 232 Leucine-rich Repeat extension Gene Families AT4G13340 70.3 3.1e-47 187.2
Lsi11g01698 . 59 394 Leucine-rich Repeat extension Gene Families AT4G13340 62.7 5.6e-44 176.4
Lsi09g01583 . 19 223 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 8.9e-42 169.1
Lsi09g01584 . 19 223 Leucine-rich Repeat extension Gene Families AT4G13340 56.1 8.9e-42 169.1
Lsi11g00270 CCT 5 387 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 3.1e-72 269.6
Lsi06g00890 CCT 16 392 Leucine-rich Repeat extension Gene Families AT3G24480 73.8 4.1e-72 269.2
Lsi05g01631 . 33 366 Leucine-rich Repeat extension Gene Families AT3G24480 63.3 1.9e-53 207.2
Lsi04g01602 . 24 232 Leucine-rich Repeat extension Gene Families AT3G24480 66.2 2.0e-47 187.2
Lsi11g01698 . 64 394 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 1.5e-45 181.0
Lsi05g01631 . 15 365 Leucine-rich Repeat extension Gene Families AT3G22800 73.8 2.6e-76 283.1
Lsi11g01698 . 64 393 Leucine-rich Repeat extension Gene Families AT3G22800 64.7 1.4e-50 197.6
Lsi06g00890 CCT 65 393 Leucine-rich Repeat extension Gene Families AT3G22800 62.2 1.4e-37 154.5
Lsi04g01602 . 61 290 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 4.1e-37 152.9
Lsi05g01631 . 32 365 Leucine-rich Repeat extension Gene Families AT5G25550 56.3 1.8e-39 160.6
Lsi11g00270 CCT 26 385 Leucine-rich Repeat extension Gene Families AT5G25550 62.2 2.0e-38 157.1
Lsi06g00890 CCT 39 219 Leucine-rich Repeat extension Gene Families AT5G25550 72.4 4.4e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92