Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01583 ATGGCTTCTCTTCATAGAAAGCAAGCTAACTATGCCTGCTTTCTTCTCCTCTTCCTCTCTCTCCCATCTCCTTCCCTCTCCGTCTCTGAAGCCGAAGCTTCCTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACATGATCAACTCCCAGACGACTACAAATACCAACTTGACATTGCTGACACTTTTCCACATGAAAGGTTGAAGAAGGCTTATGTTGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGATCCCCAGAACATTACTGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTTGACGACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCGCCGGAAATTGGGCTCATGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCGTCCCTTCCAGCTTCTCCAAGCTCGTTCTCATGTTTGAGTTCGATATCAGCAACAACCGCTTCGTCGGCCATTTCCCTCTGGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACTAAGGAGTTCGATGCCATCTTCTTAAACAACAACAGATTCACCTCCTTAATTCCAGACACCATTGGAAACTCAACCGTCTCTGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCTAGCACCATCGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGAAACAAGCTCGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTCACAGTCTTCGATGCTAGTGGCAATGGCTTCATCGGCCAGTTGCCGGAATCCATCTCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGTAACAATGCATTGAGGGGCTCTGTTTCTGGAGGACTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAACTATTTTGATGGGAAAGATGCAGCGTGTGTTGCATCTAAAGAATCGGAGAAACTCATTGATGATGTTCAAAATTGTTTGGCAAATCGACCGGAGCAGAGAGATGCAAACAAATGTAGCATTGTCCTCAAGAAATCAGTAGACTGTGGAAACTGCGGGGGTGGGTCAAGTTCTCCCGGGGTGCCAATGACTCCTGAGGATCCATCTGATCAGTCTCCATCGCCCAGATATAGGTCCCCACCACCTCCGGTGAGCTCTCCACCAGAAACGATTGACACCTCTGTTCCAGAAGTGGGGACTCCAGGGGGTGGGAGTGAGACATCCGTTCCGTCCTCACCACCTACTGATGACACTCCTAGTCCATCTCCGGTTGAATCTCCCGCACCACCAGTTCACTCACCACCACCCCCCGTTCACTCACCACCACCCCCCGTCCATTCACCACCACCACCGGTTCACTCTCCACCCCCACCAGTCCACTCACCACCACCACCTGTCCACTCTCCACCCCCACCGGTCCATTCTCCACCGCCACCTGTCTACTCCCCACCACCTCCCGTCCATTCTCCACCACCACCAGTGAACTCTCCGCCGCCACCTGTTCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCCGGTTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCACCAAATATCGGCTTCGAATACGCATCACCACCTCCACCACTGTTTCCTGGCTACTGA 1764 51.19 MASLHRKQANYACFLLLFLSLPSPSLSVSEAEASYLTRRQLLALKEHDQLPDDYKYQLDIADTFPHERLKKAYVALQAWKLAIYSDPQNITANWVGADVCSYTGVFCAPALDDPNIEVVAGIDLNHGDIAGYLPPEIGLMTDLALFHINSNRFCGIVPSSFSKLVLMFEFDISNNRFVGHFPLVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASGNGFIGQLPESISGLQNLEIMDVSNNALRGSVSGGLCKLPKLANFTFSFNYFDGKDAACVASKESEKLIDDVQNCLANRPEQRDANKCSIVLKKSVDCGNCGGGSSSPGVPMTPEDPSDQSPSPRYRSPPPPVSSPPETIDTSVPEVGTPGGGSETSVPSSPPTDDTPSPSPVESPAPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVNSPPPPVQSPPPPTASPPPPPGSSPPPSFEDVILPPNIGFEYASPPPPLFPGY 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23966231 23967994 - Lsi09G015830.1 Lsi09g01583 671196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01583 587 MobiDBLite consensus disorder prediction 454 566 - -
Lsi09g01583 587 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 582 - -
Lsi09g01583 587 Pfam Leucine rich repeat N-terminal domain 74 107 IPR013210 -
Lsi09g01583 587 MobiDBLite consensus disorder prediction 394 587 - -
Lsi09g01583 587 MobiDBLite consensus disorder prediction 406 429 - -
Lsi09g01583 587 Gene3D Ribonuclease Inhibitor 234 357 IPR032675 -
Lsi09g01583 587 Gene3D Ribonuclease Inhibitor 73 233 IPR032675 -
Lsi09g01583 587 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 12 582 - -
Lsi09g01583 587 SUPERFAMILY L domain-like 81 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01602 Lsi-Chr4:23544642 Lsi09g01583 Lsi-Chr9:23966231 1.87E-140 dispersed
Lsi09g01583 Lsi-Chr9:23966231 Lsi11g00270 Lsi-Chr11:2740543 8.25E-137 dispersed
Lsi09g01583 Lsi-Chr9:23966231 Lsi09g01584 Lsi-Chr9:23970908 1.25E-07 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01583 - - bhj:120092879 739.954