Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01584 ATGGCTTCTCTTCATAGAAAGCAAGCTAACTATGCCTGCTTTCTTCTCCTCTTCCTCTCTCTCCCATCTCCTTCCCTCTCCGTCTCTGAAGCCGAAGCTTCCTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACATGATCAACTCCCAGACGACTACAAATACCAACTTGACATTGCTGACACTTTTCCACATGAAAGGTTGAAGAAGGCTTATGTTGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGATCCCCAGAACATTACTGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTTGACGACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCGCCGGAAATTGGGCTCATGACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCGTCCCTTCCAGCTTCTCCAAGCTCGTTCTCATGTTTGAGTTCGATATCAGCAACAACCGCTTCGTCGGCCATTTCCCTCTGGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACTAAGGAGTTCGATGCCATCTTCTTAAACAACAACAGATTCACCTCCTTAATTCCAGACACCATTGGAAACTCAACCGTCTCTGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCTAGCACCATCGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGAAACAAGCTCGGCGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTCACAGTCTTCGATGCTAGTGGCAATGGCTTCATCGGCCAGTTGCCGGAATCCATCTCGGGCCTCCAAAATTTGGAGATTATGGACGTTAGTAACAATGAATTGAGGGGCTCTGTTTCTGGAGGACTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAACTATTTTGATGGGAAAGATGCAGCGTGTGTTGCATCTAAAGAATCGGAGAAACTCATTGATGATGTTCAAAATTGTTTGGCAAATCGACCGGAGCAGAGAGATGCAAACAAATGTAGCATTGTCCTCAAGAAATCAGTAGACTGTGGAAACTGCGGGGGTGGGTCAAGTTCTCCCGGGGTGCCAATGACTCCTGAGGATCCATCTGATCAGTCTCCATCGCCCAGATATAGGTCCCCACCACCTCCGGTGAGCTCTCCACCAGAAACGATTGACACCTCTGTTCCAGAAGTGGGGACTCCACCTTCTCCAAGTGAGACATCCGTTCCGTCCTCACCACCTACTGATGAAACTCCTAGTCCATCTCCGGTTGAATCTCCCGAACCACCAGTTCACTCACCACCACCCCCCGTTCACTCACCACCACCCCCAGTCCATTCCCCACCACCACCAGTCCATTCTCCTCCACCACCGGTCCATTCCCCACCACCTCCTGTCCACTCTCCTCCACCACCAGTCCACTCCCCACCACCCCCTGTCCACTCCCCACCACCCCCTGTTCACTCTCCTCCACCCCCGGTTCATTCCCCACCTCCTCCGGTGCACTCCCCACCACCACCAGTCCACTCCCCACCTCCACCAGTCCACTCTCCACCACCGCCAGTGCACTCCCCACCTCCACCGGTCCATTCTCCACCACCACCAGTGCACTCCCCACCTCCACCGGTCCACTCCCCACCACCCCCCGTCCACTCTCCACCGCCACCGGTTCACTCACCACCACCCCCCGTCCATTCACCACCACCACCGGTTCACTCTCCACCCCCACCAGTCCACTCACCACCACCACCTGTCCACTCTCCACCCCCACCGGTCCATTCTCCACCGCCACCTGTCTACTCCCCACCACCTCCCGTCCATTCTCCACCACCACCAGTGAACTCTCCGCCGCCACCTGTTCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCCGGTTCTTCTCCACCGCCATCATTCGAGGACGTCATCCTCCCACCAAATATCGGCTTCGAATACGCATCACCACCTCCACCACTGTTTCCTGGCTACTGA 2121 53.47 MASLHRKQANYACFLLLFLSLPSPSLSVSEAEASYLTRRQLLALKEHDQLPDDYKYQLDIADTFPHERLKKAYVALQAWKLAIYSDPQNITANWVGADVCSYTGVFCAPALDDPNIEVVAGIDLNHGDIAGYLPPEIGLMTDLALFHINSNRFCGIVPSSFSKLVLMFEFDISNNRFVGHFPLVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDASGNGFIGQLPESISGLQNLEIMDVSNNELRGSVSGGLCKLPKLANFTFSFNYFDGKDAACVASKESEKLIDDVQNCLANRPEQRDANKCSIVLKKSVDCGNCGGGSSSPGVPMTPEDPSDQSPSPRYRSPPPPVSSPPETIDTSVPEVGTPPSPSETSVPSSPPTDETPSPSPVESPEPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPVHSPPPPVNSPPPPVQSPPPPTASPPPPPGSSPPPSFEDVILPPNIGFEYASPPPPLFPGY 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23970908 23973028 + Lsi09G015840.1 Lsi09g01584 671197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01584 706 SUPERFAMILY L domain-like 81 346 - -
Lsi09g01584 706 Gene3D Ribonuclease Inhibitor 235 357 IPR032675 -
Lsi09g01584 706 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 484 562 - -
Lsi09g01584 706 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 538 625 - -
Lsi09g01584 706 MobiDBLite consensus disorder prediction 394 706 - -
Lsi09g01584 706 Pfam Leucine rich repeat N-terminal domain 74 107 IPR013210 -
Lsi09g01584 706 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 607 701 - -
Lsi09g01584 706 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 607 701 - -
Lsi09g01584 706 MobiDBLite consensus disorder prediction 430 445 - -
Lsi09g01584 706 MobiDBLite consensus disorder prediction 446 685 - -
Lsi09g01584 706 Gene3D Ribonuclease Inhibitor 70 234 IPR032675 -
Lsi09g01584 706 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 8 399 - -
Lsi09g01584 706 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 484 562 - -
Lsi09g01584 706 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 538 625 - -
Lsi09g01584 706 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 1 8 399 - -
Lsi09g01584 706 MobiDBLite consensus disorder prediction 406 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00231 Lsi-Chr6:2653715 Lsi09g01584 Lsi-Chr9:23970908 1.99E-90 dispersed
Lsi06g00890 Lsi-Chr6:18515443 Lsi09g01584 Lsi-Chr9:23970908 1.67E-147 dispersed
Lsi09g01584 Lsi-Chr9:23970908 Lsi11g00270 Lsi-Chr11:2740543 1.81E-136 dispersed
Lsi09g01583 Lsi-Chr9:23966231 Lsi09g01584 Lsi-Chr9:23970908 1.25E-07 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01584 - - bhj:120092879 744.191