Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01587 ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACCATATTCCTCCACCTGCTCTCTTTCCTGGACGTTCTGAAATTCCTCATCCAGTCCCTCTTCCGCCTCCTGGGGCTGCCGGAATTTCTCCACTCCGACGCTTTCCCACCAGAGCTTCAATTTCCCCTCAACCCTCCCCCGTCGGCCGTGCTCCTCCGCGAACTCCTCCCCGTGGTGAAATTCTCCGATCTGCCGGACCCACCAGAAAGGTGCGCCGTTTGCCTGTACGAATTCGAGGGGGCGGAGGAGATCCGGTGGCTAACGAACTGCAAGCACATATTCCACCGGAGGTGTGTAGACCGTTGGATGGATCACGATCATGACACGTGTCCACTTTGTAGAACGCCGTTTGTGCCTGATGGGATGATGGATGAATTCCATCAACGGCTGTGGGCTGCCTCTGGTATCGCTGAGACGTTTGAGACGGACTTCAACTCCGTTTTAGGATAG 489 56.24 MGFPVGCTEVFFPTIFLHLLSFLDVLKFLIQSLFRLLGLPEFLHSDAFPPELQFPLNPPPSAVLLRELLPVVKFSDLPDPPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCVDRWMDHDHDTCPLCRTPFVPDGMMDEFHQRLWAASGIAETFETDFNSVLG 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 23986061 23986549 - Lsi09G015870.1 Lsi09g01587 671200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01587 162 SUPERFAMILY RING/U-box 69 133 - -
Lsi09g01587 162 SMART ring_2 84 126 IPR001841 -
Lsi09g01587 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 133 IPR013083 -
Lsi09g01587 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 153 - -
Lsi09g01587 162 ProSiteProfiles Zinc finger RING-type profile. 84 127 IPR001841 -
Lsi09g01587 162 CDD RING-H2 84 127 - -
Lsi09g01587 162 PANTHER BRH1 RING FINGER PROTEIN 1 153 - -
Lsi09g01587 162 Pfam Ring finger domain 83 127 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01587 Lsi-Chr9:23986061 Lsi11g01683 Lsi-Chr11:25045538 2.11E-15 dispersed
Lsi11g01333 Lsi-Chr11:21947612 Lsi09g01587 Lsi-Chr9:23986061 4.44E-11 dispersed
Lsi01g00599 Lsi-Chr1:4794629 Lsi09g01587 Lsi-Chr9:23986061 1.26E-14 transposed
Lsi05g02053 Lsi-Chr5:27476041 Lsi09g01587 Lsi-Chr9:23986061 4.02E-42 wgd
Lsi09g00235 Lsi-Chr9:2471688 Lsi09g01587 Lsi-Chr9:23986061 8.35E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01587 K16281 - csv:101220424 318.546