Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01587 | ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACCATATTCCTCCACCTGCTCTCTTTCCTGGACGTTCTGAAATTCCTCATCCAGTCCCTCTTCCGCCTCCTGGGGCTGCCGGAATTTCTCCACTCCGACGCTTTCCCACCAGAGCTTCAATTTCCCCTCAACCCTCCCCCGTCGGCCGTGCTCCTCCGCGAACTCCTCCCCGTGGTGAAATTCTCCGATCTGCCGGACCCACCAGAAAGGTGCGCCGTTTGCCTGTACGAATTCGAGGGGGCGGAGGAGATCCGGTGGCTAACGAACTGCAAGCACATATTCCACCGGAGGTGTGTAGACCGTTGGATGGATCACGATCATGACACGTGTCCACTTTGTAGAACGCCGTTTGTGCCTGATGGGATGATGGATGAATTCCATCAACGGCTGTGGGCTGCCTCTGGTATCGCTGAGACGTTTGAGACGGACTTCAACTCCGTTTTAGGATAG | 489 | 56.24 | MGFPVGCTEVFFPTIFLHLLSFLDVLKFLIQSLFRLLGLPEFLHSDAFPPELQFPLNPPPSAVLLRELLPVVKFSDLPDPPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCVDRWMDHDHDTCPLCRTPFVPDGMMDEFHQRLWAASGIAETFETDFNSVLG | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 23986061 | 23986549 | - | Lsi09G015870.1 | Lsi09g01587 | 671200 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01587 | 162 | SUPERFAMILY | RING/U-box | 69 | 133 | - | - | |
Lsi09g01587 | 162 | SMART | ring_2 | 84 | 126 | IPR001841 | - | |
Lsi09g01587 | 162 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 133 | IPR013083 | - | |
Lsi09g01587 | 162 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 153 | - | - | |
Lsi09g01587 | 162 | ProSiteProfiles | Zinc finger RING-type profile. | 84 | 127 | IPR001841 | - | |
Lsi09g01587 | 162 | CDD | RING-H2 | 84 | 127 | - | - | |
Lsi09g01587 | 162 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 153 | - | - | |
Lsi09g01587 | 162 | Pfam | Ring finger domain | 83 | 127 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi09g01587 | Lsi-Chr9:23986061 | Lsi11g01683 | Lsi-Chr11:25045538 | 2.11E-15 | dispersed | |
Lsi11g01333 | Lsi-Chr11:21947612 | Lsi09g01587 | Lsi-Chr9:23986061 | 4.44E-11 | dispersed | |
Lsi01g00599 | Lsi-Chr1:4794629 | Lsi09g01587 | Lsi-Chr9:23986061 | 1.26E-14 | transposed | |
Lsi05g02053 | Lsi-Chr5:27476041 | Lsi09g01587 | Lsi-Chr9:23986061 | 4.02E-42 | wgd | |
Lsi09g00235 | Lsi-Chr9:2471688 | Lsi09g01587 | Lsi-Chr9:23986061 | 8.35E-52 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01587 | K16281 | - | csv:101220424 | 318.546 |