Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01590 ATGGAGTCCAGTCCTTTTGATCAAAACATCAGGGGAGTGCCCACCCATGGTGGTCGATACATTCAATACAATGTGTATGGGAATCTATTTGAGGTTTCTAGGAAGTATACTCCACCCATAAGGCCAGTTGGGAGAGGGGCTTATGGAATTGTATGTGCTGCTTTGAACTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAAAGCATTTGACAATAGAATTGATGCTAAAAGGACCTTAAGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATTATTGCTCTCAAAGATATTATAAGACCTCCTCAGAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGATACTGATCTAAATCAGATAATACGGTCCAACCAATTGTTGACTGATGACCATTGCCGGTACTTTCTGTACCAGTTGTTACGAGGGCTAAAATATGTACATTCTGCTAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTCCTTAATGCAAATTGTGACCTAAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACCGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGTTCAGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGACAACCATTGTTTCCTGGAAGAGACTATGTCCATCAGCTAAAACTTATCACTGAGCTCATTGGGTCACCCGATGACTCGAGTCTCGGATTCTTACGAAGTGACAATCCACGAAGATATTTTAGACATCTTCCTCACTTCCCCAAGCAACAGTTTTCCACTAGATTTCCCACCATGTCTCCTGCTGCTATTGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGAGGAGGCGCTGTGCCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCGAGGCCTTTCAGTTTTGATTTCGAGCAACCGTCATATACCGAAGAAAACATCAAGGAACTTGTATGGAGAGAATCCGTGAAGTTCAACCCCGATCCTACCTTTTGA 1113 41.24 MESSPFDQNIRGVPTHGGRYIQYNVYGNLFEVSRKYTPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGKAFDNRIDAKRTLREIKLLRHMDHENIIALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQLLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPKQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVEEALCHPYLAPLHDINEEPVCPRPFSFDFEQPSYTEENIKELVWRESVKFNPDPTF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 24025453 24030431 - Lsi09G015900.1 Lsi09g01590 671203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01590 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 369 - -
Lsi09g01590 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Lsi09g01590 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lsi09g01590 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Lsi09g01590 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01590 370 CDD STKc_TEY_MAPK 30 366 - -
Lsi09g01590 370 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01590 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Lsi09g01590 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01590 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 369 - -
Lsi09g01590 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Lsi09g01590 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00877 Lsi-Chr8:17123544 Lsi09g01590 Lsi-Chr9:24025453 1.97E-176 dispersed
Lsi09g01590 Lsi-Chr9:24025453 Lsi07g00868 Lsi-Chr7:9830816 2.08E-109 dispersed
Lsi01g00234 Lsi-Chr1:2129939 Lsi09g01590 Lsi-Chr9:24025453 1.06E-43 transposed
Lsi06g00031 Lsi-Chr6:334009 Lsi09g01590 Lsi-Chr9:24025453 2.86E-52 transposed
Lsi08g01372 Lsi-Chr8:22013371 Lsi09g01590 Lsi-Chr9:24025453 9.85E-154 transposed
Lsi10g01600 Lsi-Chr10:20492580 Lsi09g01590 Lsi-Chr9:24025453 1.72E-53 transposed
Lsi09g00226 Lsi-Chr9:2368024 Lsi09g01590 Lsi-Chr9:24025453 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83920 PF00069 Pkinase 3.50E-71 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01590 K20600 - csv:101215189 735.332