Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01590 | ATGGAGTCCAGTCCTTTTGATCAAAACATCAGGGGAGTGCCCACCCATGGTGGTCGATACATTCAATACAATGTGTATGGGAATCTATTTGAGGTTTCTAGGAAGTATACTCCACCCATAAGGCCAGTTGGGAGAGGGGCTTATGGAATTGTATGTGCTGCTTTGAACTCAGAAACAAATGAAGAGGTTGCAATTAAGAAGGTTGGCAAAGCATTTGACAATAGAATTGATGCTAAAAGGACCTTAAGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATTATTGCTCTCAAAGATATTATAAGACCTCCTCAGAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGATACTGATCTAAATCAGATAATACGGTCCAACCAATTGTTGACTGATGACCATTGCCGGTACTTTCTGTACCAGTTGTTACGAGGGCTAAAATATGTACATTCTGCTAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTCCTTAATGCAAATTGTGACCTAAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACCGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGTTCAGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGACAACCATTGTTTCCTGGAAGAGACTATGTCCATCAGCTAAAACTTATCACTGAGCTCATTGGGTCACCCGATGACTCGAGTCTCGGATTCTTACGAAGTGACAATCCACGAAGATATTTTAGACATCTTCCTCACTTCCCCAAGCAACAGTTTTCCACTAGATTTCCCACCATGTCTCCTGCTGCTATTGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGAGGAGGCGCTGTGCCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCGAGGCCTTTCAGTTTTGATTTCGAGCAACCGTCATATACCGAAGAAAACATCAAGGAACTTGTATGGAGAGAATCCGTGAAGTTCAACCCCGATCCTACCTTTTGA | 1113 | 41.24 | MESSPFDQNIRGVPTHGGRYIQYNVYGNLFEVSRKYTPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGKAFDNRIDAKRTLREIKLLRHMDHENIIALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQLLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPKQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVEEALCHPYLAPLHDINEEPVCPRPFSFDFEQPSYTEENIKELVWRESVKFNPDPTF | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 24025453 | 24030431 | - | Lsi09G015900.1 | Lsi09g01590 | 671203 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01590 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED | 14 | 369 | - | - | |
Lsi09g01590 | 370 | Gene3D | Phosphorylase Kinase; domain 1 | 20 | 360 | - | - | |
Lsi09g01590 | 370 | ProSitePatterns | MAP kinase signature. | 72 | 175 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Lsi09g01590 | 370 | Gene3D | Transferase(Phosphotransferase) domain 1 | 121 | 350 | - | - | |
Lsi09g01590 | 370 | ProSiteProfiles | Protein kinase domain profile. | 37 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01590 | 370 | CDD | STKc_TEY_MAPK | 30 | 366 | - | - | |
Lsi09g01590 | 370 | SMART | serkin_6 | 37 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01590 | 370 | ProSitePatterns | Protein kinases ATP-binding region signature. | 43 | 67 | IPR017441 | GO:0005524 | |
Lsi09g01590 | 370 | Pfam | Protein kinase domain | 41 | 323 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01590 | 370 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 14 | 369 | - | - | |
Lsi09g01590 | 370 | SUPERFAMILY | Protein kinase-like (PK-like) | 40 | 330 | IPR011009 | - | |
Lsi09g01590 | 370 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 159 | 171 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi08g00877 | Lsi-Chr8:17123544 | Lsi09g01590 | Lsi-Chr9:24025453 | 1.97E-176 | dispersed | |
Lsi09g01590 | Lsi-Chr9:24025453 | Lsi07g00868 | Lsi-Chr7:9830816 | 2.08E-109 | dispersed | |
Lsi01g00234 | Lsi-Chr1:2129939 | Lsi09g01590 | Lsi-Chr9:24025453 | 1.06E-43 | transposed | |
Lsi06g00031 | Lsi-Chr6:334009 | Lsi09g01590 | Lsi-Chr9:24025453 | 2.86E-52 | transposed | |
Lsi08g01372 | Lsi-Chr8:22013371 | Lsi09g01590 | Lsi-Chr9:24025453 | 9.85E-154 | transposed | |
Lsi10g01600 | Lsi-Chr10:20492580 | Lsi09g01590 | Lsi-Chr9:24025453 | 1.72E-53 | transposed | |
Lsi09g00226 | Lsi-Chr9:2368024 | Lsi09g01590 | Lsi-Chr9:24025453 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83920 | PF00069 | Pkinase | 3.50E-71 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01590 | K20600 | - | csv:101215189 | 735.332 |