Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01610 ATGCTTCCAGTTCCTCCAATGGACAAGAAGCTCTTCAGAACCACTTGCTCCACCGATCTCTGCTTCGCCATTTTCATTTCCTCCGCCTTAATTTGGATTTTTCTCTGTTTTGATTACTCCACTTTCCATTCCTCCAACAATGGCGTCCGGATCACTTCCTCTCTTAACCCTACCGTCTTCTCCACTGCCGACAACCCCAACAAATTACTCCTCAAACCCTCCCCTCCCGCCACCCGTAGCGTCGATCCTTGCACCGGCCGCTACTTGTTCATCCAGAACATTCCGACTCGATTCAATTTCGATTTGATCAGAAACTGCCAATCTCTTACAAGAGGAACCGACAAATCCGATATGTGTCCGTATTTGGTGAACTCTGGCCTCGGTCCTGGAATTGAAGATTCTCGAGGGGTTTTTCTTAACAACAGTTGGTTCAAGACGAATCAGTTTCTGTTGGAGGTCATTTTCCACAACAAGATGAAACAGTATGAGTGCTTAACGAATGATTCAGCTATGGCGTCTGCTATTTATGTGCCGTTTTACGCTGGTCTTGATATCAGCCATTACTTATGGAATCCCAGCATTTCGGTTAGGGATTCTTCCGCTAGGGATTTTCTGAGTTTCATTTCTGAAAAACCTGAGTGGAAGAAGATGTTTGGGAGGGATCATTTCTTCGTGGCCGGAAGAATTTCTTGGGATTTCAGAAGACAAACGGATGAAGTTTCTGATTGGGGAAGTAAACTCAGATTCTTGCCTGAATCTCACAATATGACGATGCTCTCTGTTGAAGCAAGTTCATGGAAAAACGATTTCGCGATTCCATATCCAACTTATTTTCATCCATCGAAACTGAGTGACGTTGTTGAATGGCAGAGTCTCATGAGGGCTAGACGGCGCCGCCATTTATTCACCTTCACCGGCGCACCACGGCCAGATCTCACAGACTCGATTCGCGGTATGGTGATCGAGCAATGTCGAGGTTCGCGTCTCTGTAAATTCATAGATTGCAGTTCTGATGGGGTTAATTGTGATGATCCTACTACCACCATGGAAGTGTTTCAGAGCTCAATCTTCTGCTTGCAGCCACCAGGAGATTCATACACCAGAAGATCAATATTCGATTCGATTTTAGCTGGATGTATTCCAGTTTTCTTTCATCCAGGTACTGCTTATTCCCAATATTTATGGCATTTTCCTGAGAATCATACAGCTTATTCTGTGTATATACCTGTGAGGGATGTGAAGAAGTGGGATGAGAGTATTGAGGGGATTTTGAGTGGGATTTCCAAGGACAGAGAATCCGCCATGAGAGAGGAGGTTATAAGAATCATTCCAAGAATTGTTTATGGAGATCCCAGATCGAAAATAAGGAATTTTGAGGATGCATTTGCTTTAGCAGTTAAAGGGATTCTTGAAAGAGTTGAAAATGTTAGAAAGAAGATTAGGGAAGGGAATGATCCTAGTGAAGGATTTGATGATCCTGATCATTTTAAGTATACATTTCCTAGCAAAAACTGA 1515 43.43 MLPVPPMDKKLFRTTCSTDLCFAIFISSALIWIFLCFDYSTFHSSNNGVRITSSLNPTVFSTADNPNKLLLKPSPPATRSVDPCTGRYLFIQNIPTRFNFDLIRNCQSLTRGTDKSDMCPYLVNSGLGPGIEDSRGVFLNNSWFKTNQFLLEVIFHNKMKQYECLTNDSAMASAIYVPFYAGLDISHYLWNPSISVRDSSARDFLSFISEKPEWKKMFGRDHFFVAGRISWDFRRQTDEVSDWGSKLRFLPESHNMTMLSVEASSWKNDFAIPYPTYFHPSKLSDVVEWQSLMRARRRRHLFTFTGAPRPDLTDSIRGMVIEQCRGSRLCKFIDCSSDGVNCDDPTTTMEVFQSSIFCLQPPGDSYTRRSIFDSILAGCIPVFFHPGTAYSQYLWHFPENHTAYSVYIPVRDVKKWDESIEGILSGISKDRESAMREEVIRIIPRIVYGDPRSKIRNFEDAFALAVKGILERVENVRKKIREGNDPSEGFDDPDHFKYTFPSKN 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 24291605 24293119 + Lsi09G016100.1 Lsi09g01610 671223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01610 504 Pfam Exostosin family 84 415 IPR040911 -
Lsi09g01610 504 PANTHER XYLOGLUCAN GALACTOSYLTRANSFERASE GT14-RELATED 15 488 - -
Lsi09g01610 504 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 15 488 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01610 - - - bhj:120068416 949.118
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01056 Lsi-Chr5:18073061 Lsi09g01610 Lsi-Chr9:24291605 8.80E-169 dispersed
Lsi07g00025 Lsi-Chr7:291000 Lsi09g01610 Lsi-Chr9:24291605 6.53E-172 dispersed
Lsi07g01328 Lsi-Chr7:19445238 Lsi09g01610 Lsi-Chr9:24291605 5.47E-86 dispersed
Lsi09g00552 Lsi-Chr9:5865099 Lsi09g01610 Lsi-Chr9:24291605 6.56E-100 dispersed
Lsi09g01610 Lsi-Chr9:24291605 Lsi02g01918 Lsi-Chr2:25098397 9.06E-10 dispersed
Lsi09g01610 Lsi-Chr9:24291605 Lsi07g00393 Lsi-Chr7:4200295 5.00E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1075 . Blo12g00162 . . . . . . Cmo08g00846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed09g0011 . . Cma08g00875 . . . . . Bhi12g02112 Tan06g1947 Cmetu06g2696 Lac12g1529 Hepe03g0625 . Lcy13g0847 . . . . . . . Lsi09g01610 . . Cme11g02209
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003717 3 1 2 2 2 1 4 1 1 1 1 1 3 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 1 46