Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01618 ATGAACAACACAGCACCCTATCCCCGTCGTGTCCTATTAGTAACATATTGCGCTCAAGGGCACATTAACCCTACCCTCCAATTCGCCAAACGTCTCACCCGCCACGGTGACGTTCACGTCACCTTCCTCACTTCTCTCTCTGCTTACCGCCGCATGGGTCAAACCCCCTCGGTCCCGCATCTCTCGTTCGCCTCGTTCTCCGACGGCTACGACGACGGTTTCAAACCTGGCAACGATATTGATCATTTCATGTCAGAGCTCGAGCATCGTGGATCTGAAGCTCTGAAGAATATAATCGAAGAGAGTAGAAACCAAGGTCAACCCTTCAGTTGTATTGTATATTCCATACTCCTCCCTTGGGTCGCTACGGTGGCGCGTTCACTCAATGTTCCGTCGGTTCTTCTATGGATTCAACCGGCGGTTGTTTTCGCTTTGTATTACTATTACAACAATGGATATTACGATGAAATTCAAAGGGTTATTTCTAGTGATGATCCTAATTCCATGAGTATTAAATTACCTGGGCTTCCATTGTTGAGTGCTCGTGACCTTCCATCATTTTTTGGTTCTTCAGATGTTTATAATTTTGCACTCCCAATGTTTAGGAGGCAATTTGAATTACTAGAGGAAGAGAGTAATCCAAAGGTTTTAATCAACACGTTTGAGGAATTGGAGAAGGATGCAGTGAGAGCGATTAAGAAATTTCGTTTGATGCCTATTGGACCATTGATTCCATCTGCTTTTCTTGACGGACATCACCCATCAGAAGCCTCTCCTGGATGTGATCTATTTCAATGTACTAGTAGTTATATCGAGTGGTTGAACTCGAAACCTAAAGCAACCGTCATTTACGTATCATCGGGAAGCATTTCGACATTATCAAAGCAACAAAAAGAGGAGATAGCAAGAGGATTATTAAGCACAAAACGACCATTTTTGTGGGTTATCCGAGACATTGAAGAAGAAGAAGATGGATTAAGCTTCAAAGAGAAACTAGAAACTCAAGGAAAGATAGTTCCATGGTGTTCCCAACTTGAGGTTCTATCAAGCCCAGCCACAGGCTGTTTTCTCACACACTGTGGTTGGAATTCTTGTTTGGAGAGTTTGGCTTGCGGCGTTCCGACCGTGGCATTTCCGCAATGGACCGATCAAGCGACCAACGCCAAGATCGTTCAGGACTTTTCGGAGACCGGAGTGAGGTTAGAGGCGACAGAGGACGGCGTGGTTAAGGGAGAAGAGATAGAAAGGTGCTTGAAGTTGGTTATGGGAGATTCAGAGAAAGGGGAAGAAATAAGGAGGAATGCTGTGAAATGGAAGAAGTTGGCTAAGGAAGCTGCTAGTGAGGGTGGTTCATCACATGCCAACTTCAAGGCTTTTGTGGATCAAGTTTCTTCTTAA 1398 44.78 MNNTAPYPRRVLLVTYCAQGHINPTLQFAKRLTRHGDVHVTFLTSLSAYRRMGQTPSVPHLSFASFSDGYDDGFKPGNDIDHFMSELEHRGSEALKNIIEESRNQGQPFSCIVYSILLPWVATVARSLNVPSVLLWIQPAVVFALYYYYNNGYYDEIQRVISSDDPNSMSIKLPGLPLLSARDLPSFFGSSDVYNFALPMFRRQFELLEEESNPKVLINTFEELEKDAVRAIKKFRLMPIGPLIPSAFLDGHHPSEASPGCDLFQCTSSYIEWLNSKPKATVIYVSSGSISTLSKQQKEEIARGLLSTKRPFLWVIRDIEEEEDGLSFKEKLETQGKIVPWCSQLEVLSSPATGCFLTHCGWNSCLESLACGVPTVAFPQWTDQATNAKIVQDFSETGVRLEATEDGVVKGEEIERCLKLVMGDSEKGEEIRRNAVKWKKLAKEAASEGGSSHANFKAFVDQVSS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 24383717 24386566 - Lsi09G016180.1 Lsi09g01618 671231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01618 465 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 271 426 IPR002213 GO:0008194
Lsi09g01618 465 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 462 - -
Lsi09g01618 465 Gene3D Glycogen Phosphorylase B; 258 444 - -
Lsi09g01618 465 ProSitePatterns UDP-glycosyltransferases signature. 341 384 IPR035595 -
Lsi09g01618 465 Gene3D Glycogen Phosphorylase B; 14 456 - -
Lsi09g01618 465 CDD GT1_Gtf-like 10 455 IPR002213 GO:0008194
Lsi09g01618 465 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 9 462 - -
Lsi09g01618 465 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01618 - - - csv:101203309 795.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01358 Lsi-Chr5:21479158 Lsi09g01618 Lsi-Chr9:24383717 2.05E-71 dispersed
Lsi09g01609 Lsi-Chr9:24283407 Lsi09g01618 Lsi-Chr9:24383717 6.54E-160 dispersed
Lsi09g01618 Lsi-Chr9:24383717 Lsi09g01621 Lsi-Chr9:24409212 1.74E-142 dispersed
Lsi09g01617 Lsi-Chr9:24379542 Lsi09g01618 Lsi-Chr9:24383717 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1051 . . . . . . . . Cmo08g00838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g02119 . . . Hepe03g0632 . Lcy13g0892 Cla07g01594 Cam07g1691 Cec07g1787 Cco07g1749 Clacu07g1674 Cmu07g1641 Cre07g2015 Lsi09g01618 . . Cme11g02216
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63