Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01624 ATGGATGTTTGTTACGCCCTCTTATTTATGTGTGTTTGTGTTTTCTTTCACTTTTGTGAAATGAAAGTTGAATTGAGGAAGCAAAGTTCTTGTTCCTTGCAATTGACCAACAAAACGGACAAATATGTTGCCTTCAAGGTTAAAACCACCAATCCGAAGAAGTACTGTGTTCGTCCTAATGCTGGAATCATTTTGCCTAGTAGTGCAAGCAATATTACAGTTACCATGCAAGCTCCTAAGGAGGCACCTCCTGATATGCAGTGCAAGGATAAGTTCTTAATTCAAAGTGTTGTAGCACCAGACGGTACAACATCAAAGGACATTAGTGCAGAATTGTTTAACAAGGGAGATGGTAAGGTAGTAGATGAATTTAAGATGAGGGTTGTTTACATTTTTGCAAATCCTCCGTCGCCTGTCCCAGAAGGATCTGAAGAAGGATCTCCTCACAGGACCACTGCAGTTGATGATGGAAACCAAAATTTTGCTTTATTTGATGCTGTTTCAAGATCTCTGGAGGAGCCTAAAGAGAAATCATCACAGGCATGGTCTAATGTTTCTAAGTTGACCGAGGAGAAAGATGCCGCTTTACAAAAGACTCAGAAACTACGACAGGAGCTGGAACTTCTGAGGAAAGAAGCGAGCGGAAGGCAGGGTGGGGGTTTCTCTGTATTGTTCGTGGTGCTAATCGGTCTCATCGGAGTTCTGATTGGTTACTTGGTGAAGAAAACATAG 732 41.8 MDVCYALLFMCVCVFFHFCEMKVELRKQSSCSLQLTNKTDKYVAFKVKTTNPKKYCVRPNAGIILPSSASNITVTMQAPKEAPPDMQCKDKFLIQSVVAPDGTTSKDISAELFNKGDGKVVDEFKMRVVYIFANPPSPVPEGSEEGSPHRTTAVDDGNQNFALFDAVSRSLEEPKEKSSQAWSNVSKLTEEKDAALQKTQKLRQELELLRKEASGRQGGGFSVLFVVLIGLIGVLIGYLVKKT 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 24456632 24461245 + Lsi09G016240.1 Lsi09g01624 671237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01624 243 PANTHER VESICLE-ASSOCIATED PROTEIN 1-3 22 241 - -
Lsi09g01624 243 Pfam MSP (Major sperm protein) domain 23 113 IPR000535 -
Lsi09g01624 243 ProSiteProfiles Major sperm protein (MSP) domain profile. 1 131 IPR000535 -
Lsi09g01624 243 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 22 241 IPR016763 GO:0005789
Lsi09g01624 243 MobiDBLite consensus disorder prediction 136 155 - -
Lsi09g01624 243 Coils Coil 185 216 - -
Lsi09g01624 243 SUPERFAMILY PapD-like 19 143 IPR008962 -
Lsi09g01624 243 PIRSF VAMP_assoc_prot 12 242 IPR016763 GO:0005789
Lsi09g01624 243 Gene3D Immunoglobulins 16 133 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01624 - - - csv:101203799 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00420 Lsi-Chr9:4466804 Lsi09g01624 Lsi-Chr9:24456632 1.99E-91 dispersed
Lsi09g01624 Lsi-Chr9:24456632 Lsi11g00486 Lsi-Chr11:5124576 1.29E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g4000 . . . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . Lsi09g01624 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83