Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01657 ATGTCGTTGAGTAGCGAAATTGAAAGCCTGTGGGTTTTTGCTTTGGCTTCGAAATGCTCATCTCTGACCAAAGAAAACATCCTTTGCTCTGTATTTCTTCTTCTCTTAATTTGGGTTCTACTTTCCATTTTCTATTGGGCCCATCCTGGCGGCCCAGCTTGGGGCCGCCGCCACCGCCGCCGCAATTCCTCCTCCGCCACTATCCCTGGGCCAAGAGGCCTCCCCGTCATCGGCAGTATGAGGTTGATGACGGGTTTGGCCCACCAAAAAATAGCTGCTATGGCCAAATCCCTAGGAGCTACTCGTCTGATGGCTTTCTCACTCGCCAACACTCGCGTGATTGTCACATGCCACCCAGACATAGCCAAAGACATCCTAAACAGTTCCGTCTTTGCTGACCGTCCGATCAAAGAATCAGCTTACTCTTTGATGTTCAATCGTGCCATTGGATTTGCTCCTTATGGACTTTATTGGCGAACCCTCCGACGAATTGCTTCACACCATCTCTTCTGCCCAAAACAAATCAAATCCTCCGAGTCACAACGCCGTCAAATCGCTTCCCAAATGGTCAAAATCTTGTCATCCACTGCCGCCACGTCATCCTCTCTTCACATTCGTCAAACTCTTAAAACCGCCTCTTTGAATAGCATGATGGGTTCGGTTTTCGGCCGGTTTTACAATCTCTCCGACTCCAATCCTGAAGTTCAACTCCTCCAAAGCCTTGTCGATGAAGGCTACGATTTATTAGGCCTTCTCAACTGGTCCGACCATCTTCCCTTTTTGGCTGATTTCGACCCACAAAAAATCCGGTTCAGATGCTCCCGGTTGGTCCCGCAAGTGAACCGCTTCGTAACCCGGATCATCAACCAACACCGCGAAAAATCAGACCAAGAAATCATGGATTTCGTCGATGTTCTTCTCTCTCTTCAACAAAACGACAACCTCTCTGACTCCGATATCATCTCCGTTCTTTGGGAAATGATATTTAGAGGAACGGACACCGTGGCGGTTTTGATCGAGTGGATTCTAGCGAGGATGGTGGTTCATAAGGACGAGCAAGAAAAGGTACAAGAAGAATTAGATAAAGTGGTTGGAAGATCACGTGCCGTCATGGAATCCGACATTCCGTCGTTGGTTTATTTAACGGCGGTGGTTAAAGAAGTTCTAAGGTTGCATCCACCCGGCCCACTTCTGTCTTGGGCTCGTATTGCTATTACTGATACAATCGTCGATGGTCATCACGTGCCTCGTGGGACCACTGCGATGGTTAACATGTGGTCGATAGCGCGGGACCCACAGATCTGGTCGGACCCACTTGAATTTATGCCTGAGAGGTTTGTGTCCGCTGGTGCTGATGTGGAGTTTTCGATTATGGGTTCGGATCTCCGACTCGCTCCATTCGGGTCGGGTCGAAGGACTTGTCCTGGAAAGGCACTTGCTTGGACAACTGTCACTTTTTGGGTGGCTACACTATTACATGAGTTTAAATGGTTGCCTTCTCCTGATCAAAACGACGTCGTCGACTTCTCTGAGGTTCTTAAGCTCTCTTGTGAGATGGCTAATCCACTCACAGTTACACTATGCCCAAGGCGTATTTAA 1599 48.66 MSLSSEIESLWVFALASKCSSLTKENILCSVFLLLLIWVLLSIFYWAHPGGPAWGRRHRRRNSSSATIPGPRGLPVIGSMRLMTGLAHQKIAAMAKSLGATRLMAFSLANTRVIVTCHPDIAKDILNSSVFADRPIKESAYSLMFNRAIGFAPYGLYWRTLRRIASHHLFCPKQIKSSESQRRQIASQMVKILSSTAATSSSLHIRQTLKTASLNSMMGSVFGRFYNLSDSNPEVQLLQSLVDEGYDLLGLLNWSDHLPFLADFDPQKIRFRCSRLVPQVNRFVTRIINQHREKSDQEIMDFVDVLLSLQQNDNLSDSDIISVLWEMIFRGTDTVAVLIEWILARMVVHKDEQEKVQEELDKVVGRSRAVMESDIPSLVYLTAVVKEVLRLHPPGPLLSWARIAITDTIVDGHHVPRGTTAMVNMWSIARDPQIWSDPLEFMPERFVSAGADVEFSIMGSDLRLAPFGSGRRTCPGKALAWTTVTFWVATLLHEFKWLPSPDQNDVVDFSEVLKLSCEMANPLTVTLCPRRI 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 24994503 24996477 + Lsi09G016570.1 Lsi09g01657 671270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01657 532 Gene3D Cytochrome P450 54 526 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 SUPERFAMILY Cytochrome P450 68 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS E-class P450 group I signature 319 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS E-class P450 group I signature 424 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS E-class P450 group I signature 212 230 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS E-class P450 group I signature 339 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS E-class P450 group I signature 382 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PANTHER CYTOCHROME P450 78A7-RELATED 4 531 - -
Lsi09g01657 532 PANTHER CYTOCHROME P450 78A6 4 531 - -
Lsi09g01657 532 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Lsi09g01657 532 Pfam Cytochrome P450 69 505 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS P450 superfamily signature 330 347 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi09g01657 532 PRINTS P450 superfamily signature 383 394 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00131 Lsi-Chr2:1069273 Lsi09g01657 Lsi-Chr9:24994503 6.66E-169 dispersed
Lsi04g00679 Lsi-Chr4:6214116 Lsi09g01657 Lsi-Chr9:24994503 2.80E-143 dispersed
Lsi09g01657 Lsi-Chr9:24994503 Lsi10g00681 Lsi-Chr10:9538744 9.14E-156 dispersed
Lsi09g01657 Lsi-Chr9:24994503 Lsi08g00903 Lsi-Chr8:17391370 2.32E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01657 K20619 - csv:101216159 920.998