Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01706 ATGAAAGGAATGGAATTTCTTACCAAAACAAAAGAAGATCAAGATCAAGAAGAAGATGATGAAGAAGAAGAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCAAATAACCAAACAACAAGATCAAGATCAAGATCAAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCATCGACCAATAGTCATGGATTTATCCTTAAGAATGGAAAGTAATGGTTTTGTTGGTGTTGTAGAAAGAGAACATATGTTTGACAAAGTTGTTACTCCAAGTGATGTTGGAAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGATTCAACCACCAATGACAAAGGCCTTATCTTAAACTTTGAAGACCGTCATGGAAAGCCTTGGCGTTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCTTTCCACCGTGCTCTCCCCACTCATTCCGCCAACGACAACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCCGATGCTCCTACTCCTCATCACCATCACCACCATTTCTCCAACCCTTTTCTCCTCCGTTGGGCTACCTCTCGTCAATTGCCACCGCCACCACCTCCTCCACGACGAACAACTCATTCCCACCATCTTTACCCTAATTACGGGTTTGAAATCCCTAATTTTGGGATGTCTAATAACAATAATTCCTCCATGTATTATTTTCGACCGTCGTCTTCTTCTTCTTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCTGGCTCAAGCGCCGCCAAACGTTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGGAGGAGAGGATTTGTCGAACGGCCGCGTTTCGAGAAGAGGGAAAGAACCCTTGTCCTTGAATTGGGATTTACTTTAA 1050 42.0 MKGMEFLTKTKEDQDQEEDDEEEEDQVVACNFFPNSQITKQQDQDQDQDQESGNYESQNEDHRPIVMDLSLRMESNGFVGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPTHSANDNNRLFIDWRRRRPDAPTPHHHHHHFSNPFLLRWATSRQLPPPPPPPRRTTHSHHLYPNYGFEIPNFGMSNNNNSSMYYFRPSSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSSAAKRLRLFGVNMECASPDGEGGGGGGEDLSNGRVSRRGKEPLSLNWDLL 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25589090 25590139 - Lsi09G017060.1 Lsi09g01706 671319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01706 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 23 316 - -
Lsi09g01706 349 MobiDBLite consensus disorder prediction 1 62 - -
Lsi09g01706 349 SMART B3_2 88 196 IPR003340 GO:0003677
Lsi09g01706 349 Pfam B3 DNA binding domain 88 195 IPR003340 GO:0003677
Lsi09g01706 349 ProSiteProfiles B3 DNA-binding domain profile. 88 196 IPR003340 GO:0003677
Lsi09g01706 349 CDD B3_DNA 86 175 IPR003340 GO:0003677
Lsi09g01706 349 Gene3D - 81 209 IPR015300 -
Lsi09g01706 349 SUPERFAMILY DNA-binding pseudobarrel domain 85 176 IPR015300 -
Lsi09g01706 349 MobiDBLite consensus disorder prediction 316 349 - -
Lsi09g01706 349 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 23 316 IPR044800 GO:0003700
Lsi09g01706 349 Coils Coil 4 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01863 Lsi-Chr3:30075045 Lsi09g01706 Lsi-Chr9:25589090 1.06E-48 dispersed
Lsi03g02281 Lsi-Chr3:33688348 Lsi09g01706 Lsi-Chr9:25589090 3.02E-14 dispersed
Lsi09g00114 Lsi-Chr9:1086117 Lsi09g01706 Lsi-Chr9:25589090 3.88E-62 dispersed
Lsi09g01022 Lsi-Chr9:14369298 Lsi09g01706 Lsi-Chr9:25589090 2.54E-40 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25964 PF02362 B3 6.20E-28 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01706 - - csv:101221141 521.931