Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01706 | ATGAAAGGAATGGAATTTCTTACCAAAACAAAAGAAGATCAAGATCAAGAAGAAGATGATGAAGAAGAAGAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCAAATAACCAAACAACAAGATCAAGATCAAGATCAAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCATCGACCAATAGTCATGGATTTATCCTTAAGAATGGAAAGTAATGGTTTTGTTGGTGTTGTAGAAAGAGAACATATGTTTGACAAAGTTGTTACTCCAAGTGATGTTGGAAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGATTCAACCACCAATGACAAAGGCCTTATCTTAAACTTTGAAGACCGTCATGGAAAGCCTTGGCGTTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCTTTCCACCGTGCTCTCCCCACTCATTCCGCCAACGACAACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCCGATGCTCCTACTCCTCATCACCATCACCACCATTTCTCCAACCCTTTTCTCCTCCGTTGGGCTACCTCTCGTCAATTGCCACCGCCACCACCTCCTCCACGACGAACAACTCATTCCCACCATCTTTACCCTAATTACGGGTTTGAAATCCCTAATTTTGGGATGTCTAATAACAATAATTCCTCCATGTATTATTTTCGACCGTCGTCTTCTTCTTCTTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCTGGCTCAAGCGCCGCCAAACGTTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGGAGGAGAGGATTTGTCGAACGGCCGCGTTTCGAGAAGAGGGAAAGAACCCTTGTCCTTGAATTGGGATTTACTTTAA | 1050 | 42.0 | MKGMEFLTKTKEDQDQEEDDEEEEDQVVACNFFPNSQITKQQDQDQDQDQESGNYESQNEDHRPIVMDLSLRMESNGFVGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPTHSANDNNRLFIDWRRRRPDAPTPHHHHHHFSNPFLLRWATSRQLPPPPPPPRRTTHSHHLYPNYGFEIPNFGMSNNNNSSMYYFRPSSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSSAAKRLRLFGVNMECASPDGEGGGGGGEDLSNGRVSRRGKEPLSLNWDLL | 349 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 25589090 | 25590139 | - | Lsi09G017060.1 | Lsi09g01706 | 671319 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01706 | 349 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 23 | 316 | - | - | |
Lsi09g01706 | 349 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Lsi09g01706 | 349 | SMART | B3_2 | 88 | 196 | IPR003340 | GO:0003677 | |
Lsi09g01706 | 349 | Pfam | B3 DNA binding domain | 88 | 195 | IPR003340 | GO:0003677 | |
Lsi09g01706 | 349 | ProSiteProfiles | B3 DNA-binding domain profile. | 88 | 196 | IPR003340 | GO:0003677 | |
Lsi09g01706 | 349 | CDD | B3_DNA | 86 | 175 | IPR003340 | GO:0003677 | |
Lsi09g01706 | 349 | Gene3D | - | 81 | 209 | IPR015300 | - | |
Lsi09g01706 | 349 | SUPERFAMILY | DNA-binding pseudobarrel domain | 85 | 176 | IPR015300 | - | |
Lsi09g01706 | 349 | MobiDBLite | consensus disorder prediction | 316 | 349 | - | - | |
Lsi09g01706 | 349 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 23 | 316 | IPR044800 | GO:0003700 | |
Lsi09g01706 | 349 | Coils | Coil | 4 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01863 | Lsi-Chr3:30075045 | Lsi09g01706 | Lsi-Chr9:25589090 | 1.06E-48 | dispersed | |
Lsi03g02281 | Lsi-Chr3:33688348 | Lsi09g01706 | Lsi-Chr9:25589090 | 3.02E-14 | dispersed | |
Lsi09g00114 | Lsi-Chr9:1086117 | Lsi09g01706 | Lsi-Chr9:25589090 | 3.88E-62 | dispersed | |
Lsi09g01022 | Lsi-Chr9:14369298 | Lsi09g01706 | Lsi-Chr9:25589090 | 2.54E-40 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25964 | PF02362 | B3 | 6.20E-28 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01706 | - | - | csv:101221141 | 521.931 |