Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01720 ATGAACTGGTTCATTAATGGTGGAGTTATGGAAACTAAGGCTGGTTTGCTTGGTGGGGGTGGGAAGATATGGCTTCAATTGTGGGAGACTGTCATTGGGAATTGTTGCAAGATGCATCACCAATACTACCAGTATATTGGATCCAAGAAAGTTGGAAAAACATGGTGGAGAAGGCTTTTGGTGGCTTGGGTTTTTAGCTCCACTCTTGCTTCTTTATGGATCTTCCATTACATGAGCTCCCAAGCTACAGAGAAGAGGAAAGAAGCCTTGGGAAGTATGTGTGATGAAAGGGCTAGGATGCTTCAAGACCAGTTTAATGTCAGTATGAATCATATTCAGGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAATTCCCATCTGCTATAGATCAGAGGACCTTTGCGAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCGGTAAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGATGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCACGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTATTACGTGCTAGAGCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGGGTCATACTTACATTTGCGGTCTACAAAAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGCGGAGTTTTTGATATTGAGTCGCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCAGAAGACGGGTTGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCGGATAGGAAGCATGAGATGCGATGCAGATTCAAACAAAAACAACCTTGGCCATGGTTGGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACCTTGAACCGAATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCTGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACAGACTTAGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCTATACCTTTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTTTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATTTCAGATAGTGTTCCTGAGACGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCAATCAAGGCAAGGAAACTAAGAACAAATTCTTCTGATGTTGTGAATTATGGTTTCACAGAGAAAGGACACATATTTGTCACTGTTAATCTCGTCAAGGAGGTTATTGAATCGATAGATCTTGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCCAATAGACGCCTCAGCTGGGCAGGATTTCGAACGTTTAGTCAAGAGGGACCCACTGCTTGTCATTTCATGCCATCTCCACCAGACCTTATTAACCTCATGGTATCCGTGGAAGATACAGGTGTTGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACAGGTATCGGGCTGAGTATTAGCAAATGTTTGGTTGGTCTCATGAAGGGGGAGATTGGTTTTGTAAGTGTACCTAAGATTGGTTCTACCTTCACATTCACTGCGGTTTTCACAAACGGCTCTTCCAATTCAAGTGATTATAACAAAACCCAACAAATTAAGCATACTTCCATCACTGCAACCTCAGAATTTAAGGGTATGAGAGCATTAGTTGTGGACCATCAACCGATTCGGGCCAAAGTATCAAGATATCATATCCAACGACTTGGAATAAATGTTGAAGTCTTATCTGACTTGAATCAATGTCTGTCTACCACGACTATTAATGGTTCAATTATCAATATGATTTTTGTTGAGCAGAAACTTTGGGATCAGGATATGAGCGCATCAGATCATTTTATCAAAAACTTGAGAAATTCTTATGCAGTTCCTCCCAAACTATTTCTCCTTACTAGCTCCATTAGTTCTTCAAAATCTAGCACTATAATTTCTGATGTATTCACTCCCACTGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTCTACACCGAGTCATGGGTGTGGGGATCAAGGGTAATCTTCGCAACGGAGAGCTTCCTGTTCTCTCACTCCGTAATTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATTGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCTGATGTGGTATGTGAAAACAGTGGACGAGATGCAATCCGACTGCTTACGCCTCCTCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACATCAAATCAATGATGGCATCCAAGTTGGGGAACTATCAAAAGAAGCATACGAGAATACATGTTATTGGCGTGTACCCATCTTGGCCATGACTGCAGACGTAATCCAGGCCACGCATGAGGAATGCCTTCGGTGTGGGATGGATGGCTACGTTTCTAAACCATTTGAAGTTGAGCGACTTTATCGAGAAGTTTCTCAATTTTTCCACAGTTCCTCAAATGGAACTTTATAG 3081 42.49 MNWFINGGVMETKAGLLGGGGKIWLQLWETVIGNCCKMHHQYYQYIGSKKVGKTWWRRLLVAWVFSSTLASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKFPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARASGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPETLIGDPGRFRQIITNLVGNSIKARKLRTNSSDVVNYGFTEKGHIFVTVNLVKEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFRTFSQEGPTACHFMPSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNGSSNSSDYNKTQQIKHTSITATSEFKGMRALVVDHQPIRAKVSRYHIQRLGINVEVLSDLNQCLSTTTINGSIINMIFVEQKLWDQDMSASDHFIKNLRNSYAVPPKLFLLTSSISSSKSSTIISDVFTPTVILKPLRAGMLAASLHRVMGVGIKGNLRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIEHQINDGIQVGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERLYREVSQFFHSSSNGTL 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25778254 25784895 + Lsi09G017200.1 Lsi09g01720 671333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01720 1026 SUPERFAMILY CheY-like 729 856 IPR011006 -
Lsi09g01720 1026 PANTHER HISTIDINE KINASE 3 29 1020 - -
Lsi09g01720 1026 SUPERFAMILY CheY-like 879 1018 IPR011006 -
Lsi09g01720 1026 SMART HKATPase_4 526 705 IPR003594 -
Lsi09g01720 1026 CDD REC_hyHK_CKI1_RcsC-like 882 1014 - -
Lsi09g01720 1026 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 526 703 IPR003594 -
Lsi09g01720 1026 SMART CHASE_2 127 328 IPR006189 -
Lsi09g01720 1026 Gene3D - 78 130 - -
Lsi09g01720 1026 ProSiteProfiles Response regulatory domain profile. 734 855 IPR001789 GO:0000160
Lsi09g01720 1026 Gene3D - 880 1023 - -
Lsi09g01720 1026 Pfam His Kinase A (phospho-acceptor) domain 414 479 IPR003661 GO:0000155|GO:0007165
Lsi09g01720 1026 ProSiteProfiles Response regulatory domain profile. 881 1018 IPR001789 GO:0000160
Lsi09g01720 1026 CDD HATPase_EvgS-ArcB-TorS-like 531 703 - -
Lsi09g01720 1026 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 468 700 IPR036890 -
Lsi09g01720 1026 ProSiteProfiles CHASE domain profile. 127 353 IPR006189 -
Lsi09g01720 1026 SMART HisKA_10 414 479 IPR003661 GO:0000155|GO:0007165
Lsi09g01720 1026 SMART REC_2 880 1014 IPR001789 GO:0000160
Lsi09g01720 1026 Gene3D - 478 709 IPR036890 -
Lsi09g01720 1026 Pfam Response regulator receiver domain 882 1013 IPR001789 GO:0000160
Lsi09g01720 1026 Gene3D CHASE domain 131 360 IPR042240 -
Lsi09g01720 1026 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 400 480 IPR036097 GO:0000155|GO:0007165
Lsi09g01720 1026 Gene3D - 383 477 - -
Lsi09g01720 1026 ProSiteProfiles Histidine kinase domain profile. 421 705 IPR005467 -
Lsi09g01720 1026 PRINTS Bacterial sensor protein C-terminal signature 648 658 IPR004358 GO:0016310|GO:0016772
Lsi09g01720 1026 PRINTS Bacterial sensor protein C-terminal signature 665 683 IPR004358 GO:0016310|GO:0016772
Lsi09g01720 1026 PRINTS Bacterial sensor protein C-terminal signature 630 644 IPR004358 GO:0016310|GO:0016772
Lsi09g01720 1026 CDD HisKA 414 475 IPR003661 GO:0000155|GO:0007165
Lsi09g01720 1026 Pfam CHASE domain 130 326 IPR006189 -
Lsi09g01720 1026 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 1020 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00708 Lsi-Chr9:8040783 Lsi09g01720 Lsi-Chr9:25778254 5.06E-63 dispersed
Lsi09g01720 Lsi-Chr9:25778254 Lsi11g01360 Lsi-Chr11:22210127 0 dispersed
Lsi09g01720 Lsi-Chr9:25778254 Lsi10g00055 Lsi-Chr10:939481 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25966 PF03924 CHASE 1.90E-37 CL0165 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01720 K14489 - csv:101216313 1920.98