Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01722 ATGATGAACGCGGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGCTCTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCAGAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTTGTACACTATAGAGATATCAATGAGGGAAGGTCTGGGACGGAAAGTGTTCCACAATTGTCTCCAGCATCGGTTTCTACTTCTGGTTCCTCTTCGTCCCAAAATCTTGCTTCAGAATACCAACATACTTCATTGAGCCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACTATACTACCGTGTCAAATGGCATGGATGGGCAGTATGAAATAACAGAATTAAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATCGGTCCATTTTATGGTCACGAGGGGGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCGGTTTTCAGTGCTTCAGCATTCAGAAAATGCTGTCCATGATAATACTTATACGTCGTTTGAGATGCAAGATGCTAATGGAAAACATCACCATTACGATATGGCACATGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCCCTTGATTCGAGTAAGACAGCGGTTCTTGAGTCTCAAGATGAACATTCTCTCCTATGGAATGAAAAAGAAAAGCCATCATCATCTTCGACTGTTGACAATGAACATTGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCCAGGAAGCTGCACATCTACAGAATATTCTTCACCACTAGACACTCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGACGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAATACCTGAGCAGGGTTATGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGAGTACTTTGTTGCGAAGCACCTCCACACCTTCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGCGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAGTCACATTCAACTGGAGCTACAAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATTTGATAATTTAGATTCTGAAGTTAGGAGCAATATTTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGTCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTGCCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCGCAACAGAAAGATAGGCATGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGTATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCATCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTTCTAAAGGCTCTGCTGAGGTAGAAGCCGAAATGACAGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTGTATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAACAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATTGCTTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGATGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAACGAGATAGGATCCATTGATGAAAATGAAGATGACGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTCGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCTGAACTCGATGGTGCCAGTAACAACTCTGCAGCGTCGACTTCTCTCAGCGATGTTTCTGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG 2889 42.09 MMNAGYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEQNPNFQRRSYWMLDQSCDHIVLVHYRDINEGRSGTESVPQLSPASVSTSGSSSSQNLASEYQHTSLSPGSVEVTSDTGNYTTVSNGMDGQYEITELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEGGSNSNLIDYYEMSNEDRFSVLQHSENAVHDNTYTSFEMQDANGKHHHYDMAHEFIFSGEGTQPWGDALDSSKTAVLESQDEHSLLWNEKEKPSSSSTVDNEHCNWLYSRGKTFPMPGSCTSTEYSSPLDTHDVNSNYNIPFLKQEHGNSFDVDTSLIVAQVQKFTIHQIIPEQGYATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVRAFEYKMNVCSHCQSHSTGATKSPEELLLLVRLVQLLLSDSSMQKFDNLDSEVRSNILKAGDDQWSSLIESLLVGSETPSGAVDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELSKGSAEVEAEMTVNCISNGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKQAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLLLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRNEIGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAELDGASNNSAASTSLSDVSGMEDCNQYPKFV 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25791157 25819289 - Lsi09G017220.1 Lsi09g01722 671335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01722 962 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Lsi09g01722 962 Gene3D Immunoglobulins 392 485 IPR013783 -
Lsi09g01722 962 ProSiteProfiles Ankyrin repeat region circular profile. 626 652 - -
Lsi09g01722 962 Gene3D - 801 848 - -
Lsi09g01722 962 SUPERFAMILY E set domains 398 481 IPR014756 -
Lsi09g01722 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 948 - -
Lsi09g01722 962 Pfam IQ calmodulin-binding motif 826 845 IPR000048 GO:0005515
Lsi09g01722 962 Pfam IQ calmodulin-binding motif 803 821 IPR000048 GO:0005515
Lsi09g01722 962 ProSiteProfiles IQ motif profile. 824 848 IPR000048 GO:0005515
Lsi09g01722 962 SMART iq_5 823 845 IPR000048 GO:0005515
Lsi09g01722 962 SMART iq_5 800 822 IPR000048 GO:0005515
Lsi09g01722 962 SMART iq_5 743 765 IPR000048 GO:0005515
Lsi09g01722 962 SUPERFAMILY Ankyrin repeat 596 687 IPR036770 -
Lsi09g01722 962 CDD IPT 398 482 - -
Lsi09g01722 962 Pfam Ankyrin repeats (many copies) 617 647 IPR002110 GO:0005515
Lsi09g01722 962 SMART ANK_2a 626 655 IPR002110 GO:0005515
Lsi09g01722 962 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
Lsi09g01722 962 Pfam IPT/TIG domain 398 481 IPR002909 -
Lsi09g01722 962 Gene3D - 493 691 IPR036770 -
Lsi09g01722 962 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Lsi09g01722 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 852 IPR027417 -
Lsi09g01722 962 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Lsi09g01722 962 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
Lsi09g01722 962 MobiDBLite consensus disorder prediction 133 186 - -
Lsi09g01722 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 948 - -
Lsi09g01722 962 SMART CG_1_2 11 129 IPR005559 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01508 Lsi-Chr1:13139276 Lsi09g01722 Lsi-Chr9:25791157 3.77E-47 dispersed
Lsi03g00760 Lsi-Chr3:10523483 Lsi09g01722 Lsi-Chr9:25791157 2.10E-56 dispersed
Lsi03g00761 Lsi-Chr3:10528298 Lsi09g01722 Lsi-Chr9:25791157 5.88E-48 dispersed
Lsi09g01478 Lsi-Chr9:22843357 Lsi09g01722 Lsi-Chr9:25791157 7.81E-38 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25967 PF03859 CG-1 2.90E-48 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01722 K21596 - csv:101222798 1697.56