Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01722 ATGATGAACGCGGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGCTCTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCAGAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTTGTACACTATAGAGATATCAATGAGGGAAGGTCTGGGACGGAAAGTGTTCCACAATTGTCTCCAGCATCGGTTTCTACTTCTGGTTCCTCTTCGTCCCAAAATCTTGCTTCAGAATACCAACATACTTCATTGAGCCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACTATACTACCGTGTCAAATGGCATGGATGGGCAGTATGAAATAACAGAATTAAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATCGGTCCATTTTATGGTCACGAGGGGGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCGGTTTTCAGTGCTTCAGCATTCAGAAAATGCTGTCCATGATAATACTTATACGTCGTTTGAGATGCAAGATGCTAATGGAAAACATCACCATTACGATATGGCACATGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCCCTTGATTCGAGTAAGACAGCGGTTCTTGAGTCTCAAGATGAACATTCTCTCCTATGGAATGAAAAAGAAAAGCCATCATCATCTTCGACTGTTGACAATGAACATTGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCCAGGAAGCTGCACATCTACAGAATATTCTTCACCACTAGACACTCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGACGTTGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAATACCTGAGCAGGGTTATGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGAGTACTTTGTTGCGAAGCACCTCCACACCTTCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGCGTTTGAATATAAAATGAATGTTTGCAGTCATTGCCAGTCACATTCAACTGGAGCTACAAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAATGCAGAAATTTGATAATTTAGATTCTGAAGTTAGGAGCAATATTTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGTCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTGCCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCGCAACAGAAAGATAGGCATGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGTATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCATCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAGTGAGCTTTCTAAAGGCTCTGCTGAGGTAGAAGCCGAAATGACAGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTGTATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAACAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATTGCTTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGATGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAACGAGATAGGATCCATTGATGAAAATGAAGATGACGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTCGACTCTCCAGATGCTCGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCTGAACTCGATGGTGCCAGTAACAACTCTGCAGCGTCGACTTCTCTCAGCGATGTTTCTGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG 2889 42.09 MMNAGYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEQNPNFQRRSYWMLDQSCDHIVLVHYRDINEGRSGTESVPQLSPASVSTSGSSSSQNLASEYQHTSLSPGSVEVTSDTGNYTTVSNGMDGQYEITELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEGGSNSNLIDYYEMSNEDRFSVLQHSENAVHDNTYTSFEMQDANGKHHHYDMAHEFIFSGEGTQPWGDALDSSKTAVLESQDEHSLLWNEKEKPSSSSTVDNEHCNWLYSRGKTFPMPGSCTSTEYSSPLDTHDVNSNYNIPFLKQEHGNSFDVDTSLIVAQVQKFTIHQIIPEQGYATESTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVRAFEYKMNVCSHCQSHSTGATKSPEELLLLVRLVQLLLSDSSMQKFDNLDSEVRSNILKAGDDQWSSLIESLLVGSETPSGAVDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEESELSKGSAEVEAEMTVNCISNGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKQAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLLLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRNEIGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLEGFREAKAELDGASNNSAASTSLSDVSGMEDCNQYPKFV 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25791157 25819289 - Lsi09G017220.1 Lsi09g01722 671335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01722 962 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Lsi09g01722 962 Gene3D Immunoglobulins 392 485 IPR013783 -
Lsi09g01722 962 ProSiteProfiles Ankyrin repeat region circular profile. 626 652 - -
Lsi09g01722 962 Gene3D - 801 848 - -
Lsi09g01722 962 SUPERFAMILY E set domains 398 481 IPR014756 -
Lsi09g01722 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 948 - -
Lsi09g01722 962 Pfam IQ calmodulin-binding motif 826 845 IPR000048 GO:0005515
Lsi09g01722 962 Pfam IQ calmodulin-binding motif 803 821 IPR000048 GO:0005515
Lsi09g01722 962 ProSiteProfiles IQ motif profile. 824 848 IPR000048 GO:0005515
Lsi09g01722 962 SMART iq_5 823 845 IPR000048 GO:0005515
Lsi09g01722 962 SMART iq_5 800 822 IPR000048 GO:0005515
Lsi09g01722 962 SMART iq_5 743 765 IPR000048 GO:0005515
Lsi09g01722 962 SUPERFAMILY Ankyrin repeat 596 687 IPR036770 -
Lsi09g01722 962 CDD IPT 398 482 - -
Lsi09g01722 962 Pfam Ankyrin repeats (many copies) 617 647 IPR002110 GO:0005515
Lsi09g01722 962 SMART ANK_2a 626 655 IPR002110 GO:0005515
Lsi09g01722 962 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
Lsi09g01722 962 Pfam IPT/TIG domain 398 481 IPR002909 -
Lsi09g01722 962 Gene3D - 493 691 IPR036770 -
Lsi09g01722 962 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Lsi09g01722 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 852 IPR027417 -
Lsi09g01722 962 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Lsi09g01722 962 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
Lsi09g01722 962 MobiDBLite consensus disorder prediction 133 186 - -
Lsi09g01722 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 948 - -
Lsi09g01722 962 SMART CG_1_2 11 129 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01722 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1697.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01508 Lsi-Chr1:13139276 Lsi09g01722 Lsi-Chr9:25791157 3.77E-47 dispersed
Lsi03g00760 Lsi-Chr3:10523483 Lsi09g01722 Lsi-Chr9:25791157 2.10E-56 dispersed
Lsi03g00761 Lsi-Chr3:10528298 Lsi09g01722 Lsi-Chr9:25791157 5.88E-48 dispersed
Lsi09g01478 Lsi-Chr9:22843357 Lsi09g01722 Lsi-Chr9:25791157 7.81E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi03g00760 . 3 357 CAMTA Transcription Factor Family AT5G09410 56.6 3.2e-99 360.1
Lsi03g00760 . 3 362 CAMTA Transcription Factor Family AT5G64220 60.2 3.7e-107 386.7
Lsi03g00761 . 10 145 CAMTA Transcription Factor Family AT5G64220 83.1 9.6e-63 239.2
Lsi03g00761 . 55 132 CAMTA Transcription Factor Family AT2G22300 84.6 3.2e-36 151.0
Lsi09g01722 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.9 1.2e-256 883.2
Lsi09g01478 . 11 659 CAMTA Transcription Factor Family AT4G16150 52.4 2.1e-191 666.4
Lsi09g01478 . 34 930 CAMTA Transcription Factor Family AT3G16940 54.2 9.0e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25967 PF03859 CG-1 2.90E-48 No_clan Lsi TF