Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01728 ATGCTCAAAACACTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCTAATGTCTCCACAAGAGAGGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGATCTTGGTCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTCAAGCAGATCAGATCAACAAGGACTCAGTACATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAGTGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCTTCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA 543 44.01 MLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVSALQLNQSADDMMYGRQQAQPSGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25887574 25894027 - Lsi09G017280.1 Lsi09g01728 671341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01728 180 Coils Coil 64 84 - -
Lsi09g01728 180 Pfam K-box region 29 111 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01728 180 Coils Coil 90 110 - -
Lsi09g01728 180 ProSiteProfiles K-box domain profile. 27 123 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi09g01728 180 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 167 - -
Lsi09g01728 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 2 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01728 Lsi-Chr9:25887574 Lsi09g01915 Lsi-Chr9:27992713 1.73E-22 dispersed
Lsi09g01728 Lsi-Chr9:25887574 Lsi07g00957 Lsi-Chr7:12109274 1.23E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01728 - - csv:101216798 358.992