Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01730 ATGTATTGGAAACTCAGGGGCATTGGTAATATGGGCGAAAGGTCTATGGATGACATGAAAGGAACTAGAGTTGCTTTGATCGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCTCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACCATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTCGGTAATCAATTACTGTCTGCCAGCAATGATGTGAACTCTTCTTGGATTGGAATAATCAAACCTGAGAACAACACGCCTCTTTGCGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTACGTTGCCCGGGTTGTTGGCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGACACTCAGCCATTTCTCAACGTTGGATCCAGCAATGCTGGGAATGTTCAGAAAGTGCTCGGAAATGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCAGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCTCTCCAGCCCATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATTCGGTGCTACTCAACGTTCCAAGATGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 987 46.2 MYWKLRGIGNMGERSMDDMKGTRVALIESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVNSSWIGIIKPENNTPLCGGNSQFDFTDRRKSTLPGLLASDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNAGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLISPAHFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25940387 25943863 - Lsi09G017300.1 Lsi09g01730 671343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01730 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Lsi09g01730 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 321 IPR044817 GO:0003677
Lsi09g01730 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Lsi09g01730 328 Gene3D - 42 111 IPR036893 GO:0003677|GO:0005634
Lsi09g01730 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Lsi09g01730 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 4 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01730 - - - csv:101217032 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00137 Lsi-Chr2:1113659 Lsi09g01730 Lsi-Chr9:25940387 7.76E-38 dispersed
Lsi06g01651 Lsi-Chr6:26789469 Lsi09g01730 Lsi-Chr9:25940387 1.49E-53 dispersed
Lsi07g01482 Lsi-Chr7:21593382 Lsi09g01730 Lsi-Chr9:25940387 1.25E-47 dispersed
Lsi09g01730 Lsi-Chr9:25940387 Lsi09g01630 Lsi-Chr9:24584950 1.97E-31 dispersed
Lsi04g02436 Lsi-Chr4:31413790 Lsi09g01730 Lsi-Chr9:25940387 4.34E-34 transposed
Lsi02g00513 Lsi-Chr2:4369515 Lsi09g01730 Lsi-Chr9:25940387 4.51E-56 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1273 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00193 Cam06g0016 Cec06g0214 Cco06g0208 Clacu06g0211 Cmu06g0204 Cre06g0977 . . . . . . Chy11g01795 Cme11g02326 . . . . . . . . Sed08g1495 . . . . . . Cpe17g01068 . Bhi12g02448 Tan06g1510 Cmetu11g0895 . Hepe03g1119 . . . . . . . . . Lsi09g01730 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 180 1012 SBP-box Gene Family AT2G47070 55.1 7.3e-238 820.5
Lsi03g01148 . 180 1011 SBP-box Gene Family AT2G47070 53.8 6.4e-234 807.4
Lsi02g00137 . 118 276 SBP-box Gene Family AT1G69170 54.1 1.8e-41 167.2
Lsi03g01153 . 25 1012 SBP-box Gene Family AT3G60030 54.2 2.7e-274 941.8
Lsi03g01148 . 25 1011 SBP-box Gene Family AT3G60030 53.2 1.0e-273 939.9
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50570 55.3 8.7e-40 161.4
Lsi09g01730 . 15 163 SBP-box Gene Family AT5G50670 55.3 8.7e-40 161.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25969 PF03110 SBP 7.40E-29 No_clan Lsi TF