Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01730 ATGTATTGGAAACTCAGGGGCATTGGTAATATGGGCGAAAGGTCTATGGATGACATGAAAGGAACTAGAGTTGCTTTGATCGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCTCCTGGAAGCGTAGCCCAAGTCCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGACTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCGACCATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTCGGTAATCAATTACTGTCTGCCAGCAATGATGTGAACTCTTCTTGGATTGGAATAATCAAACCTGAGAACAACACGCCTCTTTGCGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTACGTTGCCCGGGTTGTTGGCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGACACTCAGCCATTTCTCAACGTTGGATCCAGCAATGCTGGGAATGTTCAGAAAGTGCTCGGAAATGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCAGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCTCTCCAGCCCATTTCATCCACAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAATATTCGGTGCTACTCAACGTTCCAAGATGGACCTGATGGATCATCTGTTGATTTATTCAGGTTTTGA 987 46.2 MYWKLRGIGNMGERSMDDMKGTRVALIESSSSRLMKRSRAPGSVAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVNSSWIGIIKPENNTPLCGGNSQFDFTDRRKSTLPGLLASDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNAGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLISPAHFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25940387 25943863 - Lsi09G017300.1 Lsi09g01730 671343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01730 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Lsi09g01730 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 321 IPR044817 GO:0003677
Lsi09g01730 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Lsi09g01730 328 Gene3D - 42 111 IPR036893 GO:0003677|GO:0005634
Lsi09g01730 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Lsi09g01730 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 4 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00137 Lsi-Chr2:1113659 Lsi09g01730 Lsi-Chr9:25940387 7.76E-38 dispersed
Lsi06g01651 Lsi-Chr6:26789469 Lsi09g01730 Lsi-Chr9:25940387 1.49E-53 dispersed
Lsi07g01482 Lsi-Chr7:21593382 Lsi09g01730 Lsi-Chr9:25940387 1.25E-47 dispersed
Lsi09g01730 Lsi-Chr9:25940387 Lsi09g01630 Lsi-Chr9:24584950 1.97E-31 dispersed
Lsi04g02436 Lsi-Chr4:31413790 Lsi09g01730 Lsi-Chr9:25940387 4.34E-34 transposed
Lsi02g00513 Lsi-Chr2:4369515 Lsi09g01730 Lsi-Chr9:25940387 4.51E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25969 PF03110 SBP 7.40E-29 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01730 - - csv:101217032 645.58