Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01732 ATGCCATTTGGCGGCTACTTTTTGAAAATGCGTACACAATTTATATTGCTTGCAATGCTAGTTCGTCAGTTTTACCCGAGTTCTGGAGAAATTAGTGCAAATCACTCTTGGTCTATTCTTTCAGGTATTGTTGGCTCTGTTCTGGCAAAAGAGGGACACCTGCCATATGTATCAGATTTTGTCGCAGGTGCCTTTAAGATTGCTCTAAAGCGTATCAGTCGAGATGACTCTAGCACTTCAAAAAGCAAGCCACGCAATGACTCTCTAATGGCTCAGGTAAAAAGCTTACGTGAGGAACTGCAAATGTTAGCATCAAATCGTCAGATGACAATTGTGACTACTGGCGGAAGAGGGGGTAGGAAATATGGCGTAATCATTCTTGTGGTTGTGGTAGGATATGGGATCGTTTGGATGAAGGGTTGGAAACTTCCTGATATGATGTTTGCTACAAAGCGTAGTCTATCTGATGCTTGCAGTTCCGTTGCTAGGCAGCTCGAGAGTGTTTACTCATCCATTTCGGCTACAAAACGGAATTTATCTTCAAAAATTGACCACGTTGACAAAAGTTTGGATGAATCTTTGGATGTCACTGCTGATACACAAGAAAAGGTCTCTGAACTACGAGGTAGATCAGATACTTTTGGCAGGGATATTAAATCGGTTCATCATGCAGTCCAGACTTTGGCAATTCCTTCTGGTTCTTCCAGGAAAGCTCTTGAACTCCCTCCAACAACACCTTCACCAAAGCAAAATCAGTCGTTGCCGGTTGGCTTTTCACCCGAAGCACTGTCTCCCTCCGAGTCTAATGCTTCTTCTAACCAGGCTATGATTCAATGTCAGGCTCAAGTTCGACGGCGATCCCTCCAAAATACTGTTTCAGACCCCGGTTTGATGTCGATAGGAACTACAGATTCAAATGCTCCATCGAGCAGCAGCCTCGATACAATGTCGAATGGGACTAGTACATCTGATCCCACCATAAGCGAGGCAGGAAATTCCGGTCTTTCAGGACTTGGATTTCTTACCAGAACGAGGAGTGCAATGAGTGCAGTATTCCGGCAGTCTCGTCCAAGTGTTCAATCTTGA 1086 44.38 MPFGGYFLKMRTQFILLAMLVRQFYPSSGEISANHSWSILSGIVGSVLAKEGHLPYVSDFVAGAFKIALKRISRDDSSTSKSKPRNDSLMAQVKSLREELQMLASNRQMTIVTTGGRGGRKYGVIILVVVVGYGIVWMKGWKLPDMMFATKRSLSDACSSVARQLESVYSSISATKRNLSSKIDHVDKSLDESLDVTADTQEKVSELRGRSDTFGRDIKSVHHAVQTLAIPSGSSRKALELPPTTPSPKQNQSLPVGFSPEALSPSESNASSNQAMIQCQAQVRRRSLQNTVSDPGLMSIGTTDSNAPSSSSLDTMSNGTSTSDPTISEAGNSGLSGLGFLTRTRSAMSAVFRQSRPSVQS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25966793 25975824 - Lsi09G017320.1 Lsi09g01732 671345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01732 361 Pfam Protein of unknown function (DUF1664) 118 229 IPR012458 -
Lsi09g01732 361 Coils Coil 86 106 - -
Lsi09g01732 361 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF1664)-RELATED 229 351 - -
Lsi09g01732 361 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF1664)-RELATED 229 351 - -
Lsi09g01732 361 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF1664)-RELATED 39 229 - -
Lsi09g01732 361 PANTHER TRANSCRIPTION FACTOR, PUTATIVE (DUF1664)-RELATED 39 229 - -
Lsi09g01732 361 MobiDBLite consensus disorder prediction 229 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01732 - - - csv:101217504 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01732 Lsi-Chr9:25966793 Lsi10g00073 Lsi-Chr10:1241795 4.04E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1274 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00192 Cam06g0018 Cec06g0212 Cco06g0207 Clacu06g0210 Cmu06g0203 Cre06g0976 . . . . . . Chy11g01797 Cme11g02328 Blo02g00196 . . . Bpe14g00798 . . . Sed07g0096 . . . . . . Cpe17g01066 . Bhi12g02442 Tan06g1508 . . Hepe03g1123 . . . . . . . . . Lsi09g01732 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004739 1 2 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 7 4 1 42