Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01734 ATGGATTCATCTGTCAAGTCGTTTTTGGTGGAATTCAGAGCCACTGCCAATGCTTTCCTGTCCAACTACGAGCCACTGGCTCTCGTTTTTGGCCCTCTTTTGGTCCTACTATTGGCTCGGTTGCTTCAGTCATTTCTGGATCTTGTTTATGAAAAAGGACTTAAAGCAACCTTCTTATCGTTCTTCATGGCTACGATTAAGTTAATTCCAGGGGTGAAACGTCGGATCGATTCTGAGAAGCAGAAGGTTGTGGAAAAATTACAATCCAGCGGTAATTCTAAAAGAGAAAGCTGGAGGACTGAGTTGCCAATGTCAGGCCTAGGAACTGAAGTCATTGAGAAAATGAAAAATGAGAAACAAAACGATGTGGTTTGGCAAGGCAAATGCTCGGGTACAGTGTTTGCACATACAAATCCTTTGCATTTGGATGTATTTCAAAGTGTGGTGCGGTTTGAAGCTGAAGTAGTGGCCATGACTGCTGCTCTTCTTGGCAGTAAAGTGGAGGCTTCTGGAGGACAAATCTGTGGAAACATGACGTCGGGAGGAACTGAAAGCATACTATTGGCTGTGAAATCAACTCGTGACTATATGAAATCCAAGAAGGGAATTAAAAAACCTGAAATGATAATACCTGAGTCTGCACATTCAGCATATGATAAGGCTGCTCAATATTTTAATATCAAGCTGTGGCGTGTCCCTGTAGACAAAGAATTCAAAGCAGACGTCAAAGCTATTCGAACATTTATCAACAGGAATACTATCTTGATTGTTGGATCTGCGCCTGGGTTTCCTCATGGAATTATTGATCCGATTGTTGAACTTGGGAAATTAGCTTCTAGCTCTGGTATTTGTCTGCATGTTGACTTTTGTCTTGGCGGCTTTGTGTTGCCGTTCGCGCTTAGTGAATGGTCTGGTGGGCTTTACGTGTCTCCAACAATAGCTGGAAGCAGACCTGGTGGCTTGATTGCTGGGGCCTGGGCAGCAATGATGTCTTTGGGAGAAGAAGGATATTTGCAGAACACAAAAGAGATCATGGAAGTATCAAAGAGGATACATAGAGGGATAAACGAAATTCCTGAGTTATTTGTCATTGGAAAGCCAGACATGACAATTATAGCATTTGGATCTACTGTTATTGACGTTTTTGAAGTCAATGACATTATGTCATCAAAAGGCTGGCATTTGAATGCCTTGCAAAGACCTAGCAGTATTCACATCTGCGTGACTCTTCAACATGTATCGATAGCCGACGACTTTCTCCAGGACCTGCAAGAATCTGTCACCACTGTAAAAAAGAATCCAGGTCCAATTAATGGAGGATTAGCTCCAATATATGGTGCAGCAGAGAGAATGCCAGACAGGTCTATGGTTCAGGAGTTGCTCATAAGTTACATGGATGGAACATGCTAG 1410 42.62 MDSSVKSFLVEFRATANAFLSNYEPLALVFGPLLVLLLARLLQSFLDLVYEKGLKATFLSFFMATIKLIPGVKRRIDSEKQKVVEKLQSSGNSKRESWRTELPMSGLGTEVIEKMKNEKQNDVVWQGKCSGTVFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKVEASGGQICGNMTSGGTESILLAVKSTRDYMKSKKGIKKPEMIIPESAHSAYDKAAQYFNIKLWRVPVDKEFKADVKAIRTFINRNTILIVGSAPGFPHGIIDPIVELGKLASSSGICLHVDFCLGGFVLPFALSEWSGGLYVSPTIAGSRPGGLIAGAWAAMMSLGEEGYLQNTKEIMEVSKRIHRGINEIPELFVIGKPDMTIIAFGSTVIDVFEVNDIMSSKGWHLNALQRPSSIHICVTLQHVSIADDFLQDLQESVTTVKKNPGPINGGLAPIYGAAERMPDRSMVQELLISYMDGTC 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25987111 25994165 + Lsi09G017340.1 Lsi09g01734 671347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01734 469 PANTHER - 21 299 - -
Lsi09g01734 469 PANTHER - 299 469 - -
Lsi09g01734 469 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 21 299 - -
Lsi09g01734 469 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 299 469 - -
Lsi09g01734 469 Gene3D - 431 468 - -
Lsi09g01734 469 SUPERFAMILY PLP-dependent transferases 132 433 IPR015424 -
Lsi09g01734 469 Gene3D Aspartate Aminotransferase, domain 1 317 430 IPR015422 GO:0003824
Lsi09g01734 469 Pfam Pyridoxal-dependent decarboxylase conserved domain 148 305 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lsi09g01734 469 Gene3D - 130 302 IPR015421 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01734 K01634 SGPL1, DPL1; sphinganine-1-phosphate aldolase [EC:4.1.2.27] - csv:101217975 828.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g01734 Lsi-Chr9:25987111 Lsi09g00733 Lsi-Chr9:8445567 8.37E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1276 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00190 Cam06g0020 Cec06g0209 Cco06g0204 Clacu06g0207 Cmu06g0200 Cre06g0974 . . . . . . Chy11g01799 Cme11g02330 . . . . . . . . . . . . . . . Cpe17g01064 . Bhi12g02438 Tan06g1502 . . . . . . . . . . . . Lsi09g01734 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007917 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 2 1 36