Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01747 ATGGAGTTAAAGTTATGGTTTTTTATCTCTTTCTTCACTGATGAAGTTAAGGTTATAGTTCAAGGTCTCACAATTCCTCGAACGCATCGCTGCTCACACAATGGAGCAAAATTTCGTAATACCGAAAATACCCTTCTTGTTCACTTCTTATACGATACTACTGTTAGCCTTATCAACGGAGCTGCTCTCCTTTTCACTTTCCAGCACAAATCTCCATCCATGGCGGCTTCTTTTGCTACTACGCCTCTGGTTGGCACCATCTCGCAAAGCAAAGCTTTAGGTCCGTGTAATTCGGTTAAGCTTCATAGGGTTCAATTGCCCTCGAATCTTTCGTCCTCGTCGAGTTTTCTGTCCGGTTCCTTGCGTTTTCCTTCTCTGACAACTTCTTTGAATCCGTTGTCTTCGAGGACTGCTGTTCGTAGCTCGGTCCGAGCTAGTGCTGAGGTACCACCTCTGCAAGCGAAAGTAACAAACAAGGTATATTTCGATGTGAGCATTGGTAATCCAGTAGGGAAGCTTGCTGGGAGGATTGTGATTGGTTTATTTGGGGATGATGTCCCCAAAACGGCAGAGAACTTCCGTGCTCTTTGTACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTGCCTTTCATCGTGTAATCAGGGATTTCATGATACAAGGGGGTGACTTTGACAAGGGAAATGGAACTGGGGGTAAAAGCATATATGGTCGTACATTTAAAGATGAAAACTTCAAATTGAGTCATACTGGACCAGGAGTTGTCAGCATGGCGAATGCAGGTCCAAATACTAATGGAAGTCAATTTTTCATATGCACTGTCAAGACGCCATGGCTGGATCAGAGGCATGTGGTTTTTGGGCAAGTACTGGAAGGTTTCGACATTGTTAAGCTAATTGAGTCGCAAGAAACAGACCGTGGGGACCGGCCGTTGAAGAAGGTTGTCATCAGCGACTGTGGCGAGCTCCCGGTGGCCTAA 978 45.4 MELKLWFFISFFTDEVKVIVQGLTIPRTHRCSHNGAKFRNTENTLLVHFLYDTTVSLINGAALLFTFQHKSPSMAASFATTPLVGTISQSKALGPCNSVKLHRVQLPSNLSSSSSFLSGSLRFPSLTTSLNPLSSRTAVRSSVRASAEVPPLQAKVTNKVYFDVSIGNPVGKLAGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGSAFHRVIRDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGFDIVKLIESQETDRGDRPLKKVVISDCGELPVA 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26124029 26131834 - Lsi09G017470.1 Lsi09g01747 671360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01747 325 CDD cyclophilin_ABH_like 159 320 - -
Lsi09g01747 325 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 174 320 IPR002130 GO:0000413|GO:0003755
Lsi09g01747 325 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 171 321 IPR002130 GO:0000413|GO:0003755
Lsi09g01747 325 Gene3D - 146 325 IPR029000 -
Lsi09g01747 325 SUPERFAMILY Cyclophilin-like 150 322 IPR029000 -
Lsi09g01747 325 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 205 222 IPR020892 GO:0003755|GO:0006457
Lsi09g01747 325 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 103 322 - -
Lsi09g01747 325 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 103 322 - -
Lsi09g01747 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 222 IPR002130 GO:0000413|GO:0003755
Lsi09g01747 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 281 296 IPR002130 GO:0000413|GO:0003755
Lsi09g01747 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Lsi09g01747 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 253 268 IPR002130 GO:0000413|GO:0003755
Lsi09g01747 325 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 268 280 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01747 K03768 PPIB, ppiB; peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] - csv:101218923 418.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi04g00730 Lsi09g01747 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi09g00767 Lsi-Chr9:8752477 Lsi09g01747 Lsi-Chr9:26124029 8.28E-72 dispersed
Lsi09g01747 Lsi-Chr9:26124029 Lsi10g01435 Lsi-Chr10:18439411 6.49E-76 dispersed
Lsi11g00384 Lsi-Chr11:3977558 Lsi09g01747 Lsi-Chr9:26124029 6.57E-23 dispersed
Lsi09g01747 Lsi-Chr9:26124029 Lsi11g01025 Lsi-Chr11:17432350 4.89E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33