Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01748 ATGGCCGACGGCAAGTTCGATCTCCCTGACGATCTTCTCTCCTCCCGCCCTTCCGATCACTCGTGGACCCCCAAAGTGGAAGCTTCTGGAGGGAATGATGAGGAGAAGGTGCTCTCGGCCTTCCTTGACGAGTCAAAAGACCAAGTGGCTTCAGAGAACAGCATACCTTTGTCCCCTCAATGGCTATATGCCAAACCAAGTGAAACTAAGATGGAAGTGCGTGCTCCAACACCAGTGTCCCTTGCTAACTCAAGTGATCTCAATCAGAAAGAGGGTTGGCGCCCTGATGGGTCTGAGGACAAGAAGGATTGGAGGAAGAGTACTTCTGAAAATGAAAGTGGCCGCCGTTGGCGAGAGGAAGAGCGAGAAACTGGCTTACTTGGTGGTCGCCGCAGGAAAACTGAGCGCCGCATTGATAACATGTCAACTAAGGAGACAATGGAGGGTAGAGTTCTGCCTAATTCAGACAGATGGCATGATGGTCGCACTTCTGGGCATGATAGTCGCACTTCTGGTCATGACGGTCGTACTTCTGTACATGATGGCCGTACTTCTGGGCATGATAGTCGTACTTCTAGTCATGATGCACGGCGTGACAACAAATGGACGTTGAGATGGGGACCAGATGACAAAGAAAAGGAATCACGGATGGACAAGCGATCAGATGCTGATAAGGAAGATGTTCGTAATGACAGTCAATCAGTGAGTGGCAATCGTGCTGCTTCGGAGCGTGACTCTGAATCGCGTGATAAATGGAGGCCTCGCCATAGGATGGAAAGCCATTCTGTTGGCTCAACTTCCACTCGCGCTGCACCTGGTTTTTCACTTGAGAGAGGGCGGGGAGATGGGGGGTCTAATTTAGGATTTACAATTGGTAGAGGAAGGGCAAATACTATTGGGAGATCGTCTACTGGTCTCATTGGAGTTCCACACCTGGATAAGATTGAAATTGTTCCTGGAAAACCAAGATACTCATCTCATGCCTTTTGCTACCCTAGGGGTAAGCTTCTCGACATATATAGGAGGCAGAAATCTGATTTATCGTTCTCAGCTCTGCCTGATGATATGGAAGAATTGCAGCCTGTGACTCAACCTAGTGTTGTAGAACCATTAGCTTTTGTTTCTCCGGATGCTGAAGAGGAGACTACCCTTGGTGACATATGGAAGGGGAAAATCACCAGCAGCGGGGTTGTTTACAATTCACATAAGAAGGGGAAGCTAACTGAATGTGTTTTAGGAGATGTGGACTCCATAGATGGATACCAGACTGGGCTGGATTCAAATTTAGAGTCGGAGAATGTAGCAGCAACTCCGATTGAAGATACTGCTAACGTGAGTCATGAAGTTACAAATGATGAAGTATGCCAAGATGCTAGTGACAGGAGCATTTGGAGTCATTCTTCAATGAGAGATGTCATAGATGGAAAATATGTCAGCCATAAGGAAGAGGAAAAAAGGTCTAGTGCCATTTCTATGTCAAACTCTGGTGGATTGGCCCACACAGTTTCTACTGTAGCCTCCCAACGTGTGATGGAGATTGGTGGTGGGCACCCTGGTACTCAGCTAAATGTTGGTGTGAATGGGCGAGCAGATTCTGATCATAAAAGGCCTCATAACTTTGATGAAATTGAGTTTGCCAATTCTTTTGATGTCAAGTCCAAGCTTTCTGCTGATCCTAGCTCTATTTTCTTTATTCCCTTCTCTGAGCAAAATCCAAATAAAAGTTCTGATGTGAAATTTGAGGAGTTGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATACAGGGGCCTTTTATTGGGGCTGACATCATCTTGTGGTATGAACAAGGTTTCTTTGGGTTGGACCTGCCTGTTCGGTTGGCAGATGCCCCTGAGTCCCCATTCTGTGAGTTGGGGGAGGTTATGCCACATTTGAAAGTTAGAGAGGGAAGTGTTGATTGTGCTGATACGAAATCTCTTTCAGGCCAGTCTGGTGCCTCAGGAGGAATAATGGAGACCAATTTACCTTCTAAGCATCCAGCTCTTGATATGAATGATGCATCCACAACAAATGAGGTTCATCGGTCACTCGCTGAATTGCATAGCCTCTCCAATCAACACATTTCATCTGGAATGTCCGAGACTGAAGCACCATTTCAATTGCATTCCAAGGGTCAAAGCTTTCATGATGTTGTTGCTCAGGATGAAGAAATTGTGTTTTCTGGAAGACCTGGAAACGATGGTTACCAATTTCCAAACTCTTCTGGGGTACTGCCTATGGTGAATTCTATCAGCCAACCTTCTCTTTTGAATGAGTTAACTGATCGCAGTGTGCCTGTTCAGAATGAAAATAAGTTGCACCCTTTTGGATTGCTGTGGTCTGAGCTGGAAGGTACAAATATGAAACCAGTTGAAGTCACAAATTCGAAACATGCCAAGGCCGTTAACATGCCTTCAAGCATGGTAAGAACCGCACCATTAGTTGGGAAGCCGGAAGCATCTCTTAATGCAGAGACTTGGCTTGATGTTTACAGGAGAAGTATGCATTCTGACCAGAGTGTATACCAGGATGCGAATGTTGCTCATTCCTTGCCACATGTAGAACAAGAATCTAATAGGTTTGATTTGGCAGATCAACTCATGTCACATCAATATCATCAGGCACTTCAACAGCGGAATTTGTTGTCTCACTCTAATGAAGCTACTTTAGATCATCATATTCAACAGCAGAATCTAATTCACCAGCAGCAGCTGTTGGCTAATAGAAGTACACCCGATCTTGATCATTTCTTGAACTTGCAGATGCAACAGCAACAGCAACGGCAGCTGCAGTTACAGCATCAATTACAGCAGCAGCAGTTGCAGCAGCAGCAAAAGCTTTTGCAGGAACAACATCAGTCTCAAGTCCAGCAGGCACTGCTTGAACAGTTGTTGCGTCGACAAATGCATGATTCAGGCCTTGGGCAGACACATATTGATCCAATTAGAGCCAATAATTCTCTTGATCAGGTGATGATGGAGCAACGTCTTTTACATGAGCTACAGCAACAATCTCATCATCAACAAAGATCTGTTGATCCATCTTTTGAGCAGCTTATTAAAGCAAAGTTTGGTCACTTGCCACCACATCAAGAACAAAGAGATTTGTCAGAGTTAATATCTCGGGCTCAGCATGGACAGATACAATCATTGGATCATCAACTTCTCCAGCAGGAGATGCTACAGTCGAGACAGTTGTCTATGGCATTAAGGCAGAGGGCCAATATGGAGGACAAGAGACATGTTGGTGGTCCTATCTGGCCAGAGGATGAGGTTGATCAGCAGTTTTTCAGAGGACATGCCGGCACACAACGTTTACCGACTTCAGGGTTTGAATTATACCAGCATCAACAGAGGCAAGCTCATGCAGACCAGCTGAATCATCTTGAGCGCAATCTTTCCTTTCAAGATCGGTTTAGACTAGGTCTTTACGAGCCTGCTTCACTTCCACTTGAGAGATCAATATCCTATCCTGATGTTGCTCAGGGGATGAATCTGGATGTTGTTAATGCTATGGCTCGTGCTCGGGCTTTAGAATTGCAAGAATCCAATGCACATAATCCACCTGGTTGTCAACTGGGGCAATATGCATCCGCTACCATTCCACAGAATCATCATCACTCTCTAGTCGGTAATCAGTTTCATGTTTCACATTTTGATGGAACTGAAGGCAGCTGGTCTGAGAAAAATGAGCGACTTGGAAATGATTGGATGGAGTCTCGCATTCAACAACTGCATATCAATGCTGAACAACAGAAAAGGGAATTGGAAGCTAAAATGATTTCCGAGGATCCAACTTTATGGATGTCAGACGGGCTTAATGATGAGAAGTCAAAGCAGTTATTAATGGAACTCCTCAATCAGAAATCTGTTCATCAACCTACAGAATCCTTGGATGTAGGAAATGGAGCATCTTTCAACAGAGCATCATCTGGTCTCTATTCTGGATCAGGCTCTCTTGAACAGTCGTTCATTCTTCATTCAGGCAAGGAAAGAGGTATGAACAACACATTGCCAGTGGGGTCTTATGCTTCTAATTCTTATGAACCACTGCAAGATGAGCATCCTGGCAGCTTGACAAGCAATGAGAAGGTCCCATACAGGTCGGATTCTGTCTCTGTTGTCAAGGGAGCATCAATTTTGGCTGGTCTTAAAGCCAATGGTGCGATTAACAGCTCTAGTTCTAGCATGGCTGGTAACCTTTCTTTGAACAGAGACGTCTTAGAGGTGGAGGGTAGGGCGCGAGGATTGAAAGGTGAGGGTTTGATGAAAACTCAAGCCTTTCAAATTCAAGAAAGCATGCTTGATCAAGTGGCATCTGCTGATCGTGGGGAGTTTTCAATGGATACTCATACCCTTAGTCGGCATTCGTCTCTTGGTTCTGCGGGCTTTCACAATGAAAAGACTGGTAATACGTTTCCAGAAGAGGTTGCTAAAGACCCGGTGACCATTCACAATAAAGATAATACTTTATTGAAACGCCCTCCTGTCTCACGCACTTCGGCATCCCAGGATGGTTTGTCTGTCCTGATTCCAGATCCGGTTGTTAGAGGGAAGAACTCAGATGGTGGAAGACCGGACCCAACGAGTATCTTGGTGAACCAAGAAAACATGGCAGCCATGAAGAAAGAGATGCGTTTCCGGCGCGCTTCTTCTTGTAGTGACAGCGATGTGTCGGAGACTTCTTTTATTGATATGCTAAAGAAGACAGCTCCGCAAGAAGCTCATTTGACGACGGTGGGAGTTTCAGAGCCATCTGATGGAATGCAGGGAGGGAAAGGTGGGAAAAAGAAAGGGAAGAAGGGGAGACAGATAGACCCCGCTCTACTCGGTTTCAAAGTCACCAGCAACCGAATTATGATGGGTGAAATTCAACGCTTAGACGATTAG 4908 45.35 MADGKFDLPDDLLSSRPSDHSWTPKVEASGGNDEEKVLSAFLDESKDQVASENSIPLSPQWLYAKPSETKMEVRAPTPVSLANSSDLNQKEGWRPDGSEDKKDWRKSTSENESGRRWREEERETGLLGGRRRKTERRIDNMSTKETMEGRVLPNSDRWHDGRTSGHDSRTSGHDGRTSVHDGRTSGHDSRTSSHDARRDNKWTLRWGPDDKEKESRMDKRSDADKEDVRNDSQSVSGNRAASERDSESRDKWRPRHRMESHSVGSTSTRAAPGFSLERGRGDGGSNLGFTIGRGRANTIGRSSTGLIGVPHLDKIEIVPGKPRYSSHAFCYPRGKLLDIYRRQKSDLSFSALPDDMEELQPVTQPSVVEPLAFVSPDAEEETTLGDIWKGKITSSGVVYNSHKKGKLTECVLGDVDSIDGYQTGLDSNLESENVAATPIEDTANVSHEVTNDEVCQDASDRSIWSHSSMRDVIDGKYVSHKEEEKRSSAISMSNSGGLAHTVSTVASQRVMEIGGGHPGTQLNVGVNGRADSDHKRPHNFDEIEFANSFDVKSKLSADPSSIFFIPFSEQNPNKSSDVKFEELSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPESPFCELGEVMPHLKVREGSVDCADTKSLSGQSGASGGIMETNLPSKHPALDMNDASTTNEVHRSLAELHSLSNQHISSGMSETEAPFQLHSKGQSFHDVVAQDEEIVFSGRPGNDGYQFPNSSGVLPMVNSISQPSLLNELTDRSVPVQNENKLHPFGLLWSELEGTNMKPVEVTNSKHAKAVNMPSSMVRTAPLVGKPEASLNAETWLDVYRRSMHSDQSVYQDANVAHSLPHVEQESNRFDLADQLMSHQYHQALQQRNLLSHSNEATLDHHIQQQNLIHQQQLLANRSTPDLDHFLNLQMQQQQQRQLQLQHQLQQQQLQQQQKLLQEQHQSQVQQALLEQLLRRQMHDSGLGQTHIDPIRANNSLDQVMMEQRLLHELQQQSHHQQRSVDPSFEQLIKAKFGHLPPHQEQRDLSELISRAQHGQIQSLDHQLLQQEMLQSRQLSMALRQRANMEDKRHVGGPIWPEDEVDQQFFRGHAGTQRLPTSGFELYQHQQRQAHADQLNHLERNLSFQDRFRLGLYEPASLPLERSISYPDVAQGMNLDVVNAMARARALELQESNAHNPPGCQLGQYASATIPQNHHHSLVGNQFHVSHFDGTEGSWSEKNERLGNDWMESRIQQLHINAEQQKRELEAKMISEDPTLWMSDGLNDEKSKQLLMELLNQKSVHQPTESLDVGNGASFNRASSGLYSGSGSLEQSFILHSGKERGMNNTLPVGSYASNSYEPLQDEHPGSLTSNEKVPYRSDSVSVVKGASILAGLKANGAINSSSSSMAGNLSLNRDVLEVEGRARGLKGEGLMKTQAFQIQESMLDQVASADRGEFSMDTHTLSRHSSLGSAGFHNEKTGNTFPEEVAKDPVTIHNKDNTLLKRPPVSRTSASQDGLSVLIPDPVVRGKNSDGGRPDPTSILVNQENMAAMKKEMRFRRASSCSDSDVSETSFIDMLKKTAPQEAHLTTVGVSEPSDGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD 1635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26132221 26141100 - Lsi09G017480.1 Lsi09g01748 671361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01748 1635 CDD GYF 582 639 IPR003169 GO:0005515
Lsi09g01748 1635 ProSiteProfiles GYF domain profile. 582 632 IPR003169 GO:0005515
Lsi09g01748 1635 Coils Coil 926 948 - -
Lsi09g01748 1635 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1635 - -
Lsi09g01748 1635 MobiDBLite consensus disorder prediction 1 33 - -
Lsi09g01748 1635 SMART gyf_5 583 637 IPR003169 GO:0005515
Lsi09g01748 1635 MobiDBLite consensus disorder prediction 92 232 - -
Lsi09g01748 1635 MobiDBLite consensus disorder prediction 69 281 - -
Lsi09g01748 1635 SUPERFAMILY GYF domain 580 638 IPR035445 -
Lsi09g01748 1635 MobiDBLite consensus disorder prediction 242 262 - -
Lsi09g01748 1635 MobiDBLite consensus disorder prediction 1587 1611 - -
Lsi09g01748 1635 Gene3D - 568 652 IPR035445 -
Lsi09g01748 1635 Pfam GYF domain 586 623 IPR003169 GO:0005515
Lsi09g01748 1635 Coils Coil 1241 1265 - -
Lsi09g01748 1635 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1635 - -
Lsi09g01748 1635 MobiDBLite consensus disorder prediction 1518 1537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01748 K18730 GIGYF; PERQ amino acid-rich with GYF domain-containing protein - csv:101204211 2773.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g01403 Lsi-Chr8:22303261 Lsi09g01748 Lsi-Chr9:26132221 2.86E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44