Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01752 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGTTGAATCCTGAAAAGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCGCCGAACATTGCCAAATTGCCTTCTGGAATAGACAAACTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCGAAGGATATGCCTCTTGTCAACATTTCTGCTCAAACTTTCACTTTCCGGGAGCTTGCAATTGCAACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCAGTTAAACAGTTGGACAGGAACGGCCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAGCCCTTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGGTTAGAGTACTTGCATGACAAGGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAGGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGGGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCTAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTCTACCAGGCTTTAGCTGTGGCATCTATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTCATTGGAGATGTGGTTACCGCCCTGTCTTATTTAGCAAATCAATCCTTTGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTCAGAGAGGTTCTGGTGACCGGGATGAGAGACGGAACAGAGACGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCATCCGGACGAAAGTGGCCATTAGATGGTTCCGAGAAGGACGACTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGATAGAGAGCGTGCAGTCGCTGAGGCCAAGATGTGGGGAGAAAATTGGCGAGAAAAAAGACGACAGAGCACACAAGGCAGTTTTGATGGCTCTAATGGATAA 1404 46.65 MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPKDMPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSFDPSSPSGTAAAAQRGSGDRDERRNRDEKGGGVVKNEEGGASGRKWPLDGSEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26197883 26204462 + Lsi09G017520.1 Lsi09g01752 671365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01752 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Lsi09g01752 467 Pfam Protein kinase domain 90 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01752 467 MobiDBLite consensus disorder prediction 382 400 - -
Lsi09g01752 467 Gene3D Phosphorylase Kinase; domain 1 46 161 - -
Lsi09g01752 467 PANTHER OS07G0668900 PROTEIN 1 462 - -
Lsi09g01752 467 SUPERFAMILY Protein kinase-like (PK-like) 65 359 IPR011009 -
Lsi09g01752 467 MobiDBLite consensus disorder prediction 444 467 - -
Lsi09g01752 467 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi09g01752 467 MobiDBLite consensus disorder prediction 366 430 - -
Lsi09g01752 467 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Lsi09g01752 467 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 462 - -
Lsi09g01752 467 MobiDBLite consensus disorder prediction 413 430 - -
Lsi09g01752 467 CDD STKc_IRAK 91 359 - -
Lsi09g01752 467 MobiDBLite consensus disorder prediction 7 27 - -
Lsi09g01752 467 MobiDBLite consensus disorder prediction 1 61 - -
Lsi09g01752 467 Gene3D Transferase(Phosphotransferase) domain 1 162 373 - -
Lsi09g01752 467 MobiDBLite consensus disorder prediction 444 458 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02078 Lsi-Chr2:26971747 Lsi09g01752 Lsi-Chr9:26197883 1.36E-172 dispersed
Lsi04g00826 Lsi-Chr4:7949316 Lsi09g01752 Lsi-Chr9:26197883 0 dispersed
Lsi05g00612 Lsi-Chr5:7554669 Lsi09g01752 Lsi-Chr9:26197883 3.87E-157 dispersed
Lsi05g01067 Lsi-Chr5:18173193 Lsi09g01752 Lsi-Chr9:26197883 7.11E-104 dispersed
Lsi05g01512 Lsi-Chr5:22909461 Lsi09g01752 Lsi-Chr9:26197883 0 dispersed
Lsi06g00150 Lsi-Chr6:1564114 Lsi09g01752 Lsi-Chr9:26197883 3.53E-102 dispersed
Lsi06g00279 Lsi-Chr6:3176091 Lsi09g01752 Lsi-Chr9:26197883 2.77E-104 dispersed
Lsi06g00754 Lsi-Chr6:13984967 Lsi09g01752 Lsi-Chr9:26197883 6.90E-156 dispersed
Lsi09g01752 Lsi-Chr9:26197883 Lsi10g01319 Lsi-Chr10:17398309 5.39E-145 dispersed
Lsi09g01752 Lsi-Chr9:26197883 Lsi03g02064 Lsi-Chr3:31958333 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83926 PF00069 Pkinase 1.80E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01752 K13430 - csv:101219880 910.212