Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi09g01752 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGTTGAATCCTGAAAAGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCGCCGAACATTGCCAAATTGCCTTCTGGAATAGACAAACTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCGAAGGATATGCCTCTTGTCAACATTTCTGCTCAAACTTTCACTTTCCGGGAGCTTGCAATTGCAACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCAGTTAAACAGTTGGACAGGAACGGCCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGGCTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAGCCCTTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGGTTAGAGTACTTGCATGACAAGGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAGGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGGGAACAGAACCTTGTCACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCTAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTCTACCAGGCTTTAGCTGTGGCATCTATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTCATTGGAGATGTGGTTACCGCCCTGTCTTATTTAGCAAATCAATCCTTTGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTCAGAGAGGTTCTGGTGACCGGGATGAGAGACGGAACAGAGACGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCATCCGGACGAAAGTGGCCATTAGATGGTTCCGAGAAGGACGACTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGATAGAGAGCGTGCAGTCGCTGAGGCCAAGATGTGGGGAGAAAATTGGCGAGAAAAAAGACGACAGAGCACACAAGGCAGTTTTGATGGCTCTAATGGATAA | 1404 | 46.65 | MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPKDMPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSFDPSSPSGTAAAAQRGSGDRDERRNRDEKGGGVVKNEEGGASGRKWPLDGSEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG | 467 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 26197883 | 26204462 | + | Lsi09G017520.1 | Lsi09g01752 | 671365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi09g01752 | 467 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 208 | 220 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi09g01752 | 467 | Pfam | Protein kinase domain | 90 | 295 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01752 | 467 | MobiDBLite | consensus disorder prediction | 382 | 400 | - | - | |
Lsi09g01752 | 467 | Gene3D | Phosphorylase Kinase; domain 1 | 46 | 161 | - | - | |
Lsi09g01752 | 467 | PANTHER | OS07G0668900 PROTEIN | 1 | 462 | - | - | |
Lsi09g01752 | 467 | SUPERFAMILY | Protein kinase-like (PK-like) | 65 | 359 | IPR011009 | - | |
Lsi09g01752 | 467 | MobiDBLite | consensus disorder prediction | 444 | 467 | - | - | |
Lsi09g01752 | 467 | ProSiteProfiles | Protein kinase domain profile. | 85 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi09g01752 | 467 | MobiDBLite | consensus disorder prediction | 366 | 430 | - | - | |
Lsi09g01752 | 467 | ProSitePatterns | Protein kinases ATP-binding region signature. | 91 | 114 | IPR017441 | GO:0005524 | |
Lsi09g01752 | 467 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBS1 | 1 | 462 | - | - | |
Lsi09g01752 | 467 | MobiDBLite | consensus disorder prediction | 413 | 430 | - | - | |
Lsi09g01752 | 467 | CDD | STKc_IRAK | 91 | 359 | - | - | |
Lsi09g01752 | 467 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Lsi09g01752 | 467 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Lsi09g01752 | 467 | Gene3D | Transferase(Phosphotransferase) domain 1 | 162 | 373 | - | - | |
Lsi09g01752 | 467 | MobiDBLite | consensus disorder prediction | 444 | 458 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02078 | Lsi-Chr2:26971747 | Lsi09g01752 | Lsi-Chr9:26197883 | 1.36E-172 | dispersed | |
Lsi04g00826 | Lsi-Chr4:7949316 | Lsi09g01752 | Lsi-Chr9:26197883 | 0 | dispersed | |
Lsi05g00612 | Lsi-Chr5:7554669 | Lsi09g01752 | Lsi-Chr9:26197883 | 3.87E-157 | dispersed | |
Lsi05g01067 | Lsi-Chr5:18173193 | Lsi09g01752 | Lsi-Chr9:26197883 | 7.11E-104 | dispersed | |
Lsi05g01512 | Lsi-Chr5:22909461 | Lsi09g01752 | Lsi-Chr9:26197883 | 0 | dispersed | |
Lsi06g00150 | Lsi-Chr6:1564114 | Lsi09g01752 | Lsi-Chr9:26197883 | 3.53E-102 | dispersed | |
Lsi06g00279 | Lsi-Chr6:3176091 | Lsi09g01752 | Lsi-Chr9:26197883 | 2.77E-104 | dispersed | |
Lsi06g00754 | Lsi-Chr6:13984967 | Lsi09g01752 | Lsi-Chr9:26197883 | 6.90E-156 | dispersed | |
Lsi09g01752 | Lsi-Chr9:26197883 | Lsi10g01319 | Lsi-Chr10:17398309 | 5.39E-145 | dispersed | |
Lsi09g01752 | Lsi-Chr9:26197883 | Lsi03g02064 | Lsi-Chr3:31958333 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83926 | PF00069 | Pkinase | 1.80E-45 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi09g01752 | K13430 | - | csv:101219880 | 910.212 |