Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01756 ATGTGGGGAATCGTTCGGCAAAAAGTTGGCGCTGGAGCCTCCTCTACTCTGGCTTTGCAGAGGCTTCGCCCAGCCGCCTCGGCATCTAGATGCTATTCATCTGCCGCAAAAGAGATGACTGTGAGAGATGCTCTAAACTCTGCACTTGATGAAGAAATGTCCGCTGATCCTAAAGTTTTTCTGATGGGTGAAGAGGTTGGAGAATATCAGGGTGCCTATAAGATAACCAAAGGGCTTTTGGAGAAATATGGTCCCGAGAGGGTTCTTGATACCCCAATCACAGAGGCTGGGTTTGCTGGTATTGGTGTTGGCGCTGCTTACCATGGTCTGAAGCCTGTTGTGGAATTTATGACATTTAATTTCTCCATGCAGGCCATTGATCATATCATTAATTCTGCGGCAAAAACAAATTATATGTCAGCTGGCCAAATTTCCGTGCCAATTGTCTTTAGGGGGCCTAATGGTGCAGCTGCTGGAGTTGGTGCCCAACACTCCCAGTGTTATGCAGCATGGTATGGGTCCTGTCCTGGCTTGAAAGTTTTGGCCCCATATTCATCAGAGGATGCTCGTGGGCTTTTAAAAGCTGCTATAAGGGATCCAGATCCTGTGGTGTTTCTTGAAAATGAGTTATTATACGGTGAGTCATTCTCTGTTTCAGCAGAGGTCCTTGATTCCAGTTTCACCGCTCCCATAGGAAAAGCTAAGATTGAGAGAGAAGGGAAGGATGTGACTATTACTGCTTTTTCGAAGATGGTGGGCTATGCACTTAAGTGGGTGGATGAGGATCCGCCAACCCTGCAGGACGAGAATTCGGGGCAAACGAAGCCAAAAACTGCCGCATCTCCTCCGCGAATTGTTGTTGTTTGTTGGCTTGTAGAGTTAATCGTTCAACGCTTTTGGCCAACGAGGCAGCTGAAGTACTTTCCAAAGAAGGAATTAGTGCTGAGAGCCACGATTAATGCTTCAGTTAGGAAGACCAATAGATTAGTAACAGTTGAAGAAGGGTTTCCTCAGCATGGGGTTGGAGCTGAGATCTGCACATCTGTCGTCGAGGAAAGTTTTGGCTATCTTGACGCGCCAGTGGAGAGGATTGCAGGGGCTGACATTCCCATGCCGTATGCAGCCAATCTCGAAAGGTTGGCTGTCCCTCAGGTTGAGGACATCGTTCGAGCAGCAAAAAGAGCATGCTACAGAGCCGTACCATTGGCCGCAACTGGTTAA 1221 47.91 MWGIVRQKVGAGASSTLALQRLRPAASASRCYSSAAKEMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPERVLDTPITEAGFAGIGVGAAYHGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFSVSAEVLDSSFTAPIGKAKIEREGKDVTITAFSKMVGYALKWVDEDPPTLQDENSGQTKPKTAASPPRIVVVCWLVELIVQRFWPTRQLKYFPKKELVLRATINASVRKTNRLVTVEEGFPQHGVGAEICTSVVEESFGYLDAPVERIAGADIPMPYAANLERLAVPQVEDIVRAAKRACYRAVPLAATG 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26282769 26294417 + Lsi09G017560.1 Lsi09g01756 671369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01756 406 PANTHER DEHYDROGENASE RELATED 5 257 IPR027110 GO:0004739|GO:0006086
Lsi09g01756 406 PANTHER DEHYDROGENASE RELATED 316 401 IPR027110 GO:0004739|GO:0006086
Lsi09g01756 406 SUPERFAMILY TK C-terminal domain-like 227 260 IPR009014 GO:0003824
Lsi09g01756 406 Pfam Transketolase, pyrimidine binding domain 38 213 IPR005475 -
Lsi09g01756 406 Gene3D - 314 394 IPR009014 GO:0003824
Lsi09g01756 406 Gene3D - 38 228 - -
Lsi09g01756 406 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 37 217 IPR029061 -
Lsi09g01756 406 SMART Transket_pyr_3 39 214 IPR005475 -
Lsi09g01756 406 CDD TPP_PYR_E1-PDHc-beta_like 43 209 - -
Lsi09g01756 406 Gene3D - 229 266 IPR009014 GO:0003824
Lsi09g01756 406 Pfam Transketolase, C-terminal domain 316 388 IPR033248 -
Lsi09g01756 406 SUPERFAMILY TK C-terminal domain-like 317 395 IPR009014 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01756 K00162 PDHB, pdhB; pyruvate dehydrogenase E1 component beta subunit [EC:1.2.4.1] - csv:101220981 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00897 Lsi-Chr2:8571269 Lsi09g01756 Lsi-Chr9:26282769 6.47E-75 dispersed
Lsi06g00384 Lsi-Chr6:4216995 Lsi09g01756 Lsi-Chr9:26282769 6.61E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1321 Blo01g00162 . . Bda11g00379 . . . . . . . . . . . . . . . . . . . . Cla06g00168 Cam06g0044 Cec06g0188 Cco06g0181 Clacu06g0183 Cmu06g0178 Cre06g0951 . . . . . . Chy11g01820 Cme11g02354 . Blo12g00290 . Bda11g00379 . . . . Sed07g0124 . . . . . . Cpe17g00933 . Bhi12g02405 Tan06g1460 . . . . . . . . . . . . Lsi09g01756 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003819 3 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 2 45