Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi09g01757 ATGGAGGAGGACATACCAGAAAAAAGGAGCATCAAAATGAAGACTTCTTTGAGGAAGTTGAGGGGTTTTGGACTGCATAAGCACGAACCTAAGGACCGTGTAGATCTTCGTCCTTTGGCTCAATTGGATGAGCTTGCTCAGGCTTCTCGGGACATGGATGAAATGAGAGACTGTTATGATAGCTTACTTTCTGCTGCTGCCGCTACAGAAAATAGTGCTTACGAATTCTCAGTCTCGTTACAAGAAATGGGTGCATGCCTTCTTGAGAAAACCGCACTGAATGATGATGAAGATAGTGGTATGTTAAATTGTGGTTGGCTTTGTTATCACCATCTCAAACTTGGGAATTATGAGTTATGTATCTCTTCTCACCCCATGCAGCGCTCTCATATTTCACAAACAATAACACGCCCATCTGAATCTCTTCTGAATCAACTTCGAACAGTTGAGGAGATGAAAAGGCAATGTGATGAGAAAAGAGAAGTGTATGAGTACATGAGACAGAGGCACAAAGAGAAGGGGAGGTCAAAAACTGTCAAAGGAGAGAGCTTTACATTGCAACAGTTGCAAACAGCCCGAGAAGAATATGATGATGAGGCAACATTGTTTGTTTTCCGGTTGAAATCTTTGAAGCAAGGACAGTCTCATAGTCTTCTCACGCAGGCTGCACGTCATCATGCTGCTCAGCTGTGTTTCTTCAAGAAGGCACTTCAATCTCTTGAAGCAGTGGAACCACATGTTAAATCACTGACAGAGCAGCAGCACATAGATTATCGGTTCAGTGGACTGGAAGATGACAACATGGATGATGGACATCATGATGGTGTCGATGATGATGATGATGGCTATGATGAGGGTGATGATGGGGAATTAAGTTTTGATTATGCGCAAAATGATCATGATCAAGCTATGTCAACATTACGGAGTTCTGAGTTGGACCAGCCAGATCTTGCATTTCATCATGTGGAAGCTCTGAAGGAAAATCTGGACAGAAATCGTAGGAATTCTTTTTCCTTTGGTGGTAGAACAGTAAGCCAGTCTGCTCCACTTTTTCCTGATAAAAAATTTGATGCTGCTGAAAGAATAAGACAGATGCGTCCTTCATCTACTCGGAAGTTCCATACATATGTTCTACCCACCCCAGCTGATACAAAGGGGTCAATTCCTGGGGTTCCTGGAAATCCCGTGCCTAGCACCATACAGACCATACGTCAGCAAAATTTATTGCGGCACTCATCACCATTGGAACCGAGGAAGTACGACAAGTTAGTGGGAGATGACAGTATGTCAGGACATGGTGTTGCAAAGGCACAGTCTGTACTCAAGGAGAGTAACACTAACGCATCATCCACTCAGTTACCTCCTCCTCTGTCTGATGGTTTGCCACGGCTCAGTTTAGCTGCTGCTTCTGATGCTAAAAAAGTTAAGAGACTAGCCTTTTCGGGCCCTCTAATAGGTAAGCCATCAACTAACAAGCCCATTCCAGTCGAAAACCCTCAGTTGTTTTCGGGACCTCTCTTACGAAATCCAATACCACAACCTATGTCATCATCACCAAAGGTGTCCCCAGCTGCTTCCCCCACTTTTATTTCCTCACCTAAAATAAATGAGCTTCATGAGCTTCCTAGGCCTCCTATTAGTTCAACATATAAGTCGTCAAGACCTTCAGGTTTAATTGGTCACTCAGCTCCTTTGGTATCCAAAAGTCAAGGACAATCTGCTGCAACTAAAGTTGTTGTAAGGAGTGCGGCATCTCCATTGCCAATTCCTCCTCTCCAAACCATCACACGTAGTTTCTCCATTCCATCCAGGAGTCCTAGGGAGACAGAGACCTTATTTCACGAGCCGAAACCTTTGGAAACCGTTCGATCTGCTGAAATGGTATTAGACACATCTTCACCTCCCTTGTCACCACTTACCTTATCTAACAACCAGAATCGTACATCAACAGGTTCAGAGAATGCTCCTGCAGTTAAAGGTAATAAACCCCTTCGCTGTTGA 2001 43.98 MEEDIPEKRSIKMKTSLRKLRGFGLHKHEPKDRVDLRPLAQLDELAQASRDMDEMRDCYDSLLSAAAATENSAYEFSVSLQEMGACLLEKTALNDDEDSGMLNCGWLCYHHLKLGNYELCISSHPMQRSHISQTITRPSESLLNQLRTVEEMKRQCDEKREVYEYMRQRHKEKGRSKTVKGESFTLQQLQTAREEYDDEATLFVFRLKSLKQGQSHSLLTQAARHHAAQLCFFKKALQSLEAVEPHVKSLTEQQHIDYRFSGLEDDNMDDGHHDGVDDDDDGYDEGDDGELSFDYAQNDHDQAMSTLRSSELDQPDLAFHHVEALKENLDRNRRNSFSFGGRTVSQSAPLFPDKKFDAAERIRQMRPSSTRKFHTYVLPTPADTKGSIPGVPGNPVPSTIQTIRQQNLLRHSSPLEPRKYDKLVGDDSMSGHGVAKAQSVLKESNTNASSTQLPPPLSDGLPRLSLAAASDAKKVKRLAFSGPLIGKPSTNKPIPVENPQLFSGPLLRNPIPQPMSSSPKVSPAASPTFISSPKINELHELPRPPISSTYKSSRPSGLIGHSAPLVSKSQGQSAATKVVVRSAASPLPIPPLQTITRSFSIPSRSPRETETLFHEPKPLETVRSAEMVLDTSSPPLSPLTLSNNQNRTSTGSENAPAVKGNKPLRC 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26303257 26310794 + Lsi09G017570.1 Lsi09g01757 671370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi09g01757 666 CDD BAR 51 246 - -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 271 288 - -
Lsi09g01757 666 Gene3D Arfaptin homology (AH) domain/BAR domain 41 264 IPR027267 -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 514 555 - -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 262 288 - -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 514 533 - -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 628 656 - -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 439 456 - -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 628 666 - -
Lsi09g01757 666 MobiDBLite consensus disorder prediction 425 459 - -
Lsi09g01757 666 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 13 650 IPR037488 -
Lsi09g01757 666 SUPERFAMILY BAR/IMD domain-like 43 251 IPR027267 -
Lsi09g01757 666 Coils Coil 149 169 - -
Lsi09g01757 666 PANTHER BNAA05G10100D PROTEIN 13 650 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi09g01757 - - - bhj:120092875 1140.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1323 Blo01g00161 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00167 Cam06g0045 Cec06g0187 Cco06g0180 Clacu06g0182 Cmu06g0177 Cre06g0950 . . . . . . Chy11g01821 Cme11g02355 . . . . . . . . . . . . . . . Cpe17g00934 . Bhi12g02403 Tan06g1458 . . . . . . . . . . . . Lsi09g01757 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003357 3 3 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 49